Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000939-TA|BGIBMGA000939-PA|undefined
(287 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0291 + 2113234-2113307,2113637-2113712,2113914-2114005,211... 31 1.4
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 30 1.9
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 30 1.9
04_04_1167 + 31432731-31433769,31433893-31433941,31434363-314344... 29 3.3
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 29 4.3
08_01_0208 + 1662101-1662223,1663130-1663243,1663327-1663468,166... 28 7.5
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657... 28 7.5
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 28 10.0
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 28 10.0
02_01_0009 + 58815-58884,59086-59156,59632-59725,59797-59864,601... 28 10.0
>07_01_0291 +
2113234-2113307,2113637-2113712,2113914-2114005,
2114079-2114220,2114297-2114397,2114490-2114619,
2114775-2114919,2115034-2115275
Length = 333
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 189 MCVQVVWLALGRKSFNQIELEVNRVFKSDIFNTVEHTLKTGYVGKMTKE 237
M V + +L N ++VNR+F + F+ V H YVG+ T E
Sbjct: 30 MLVPIWFLQDNLSRGNMGAIKVNRIFAENAFDAVMHFAAVAYVGESTLE 78
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 72 TAPVGILSPVL--INMLHLPTTERFLRALILCCQYYLQIADEMANRI 116
T+P+ ++ P IN+ LP+ RF +++C YLQ + + RI
Sbjct: 1887 TSPIKVILPTSCHINISFLPSYYRFTSVILVCIFRYLQSCQDSSARI 1933
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 38 VETIQISTKAPTGAIEFRDDVDLIEQDVKDIAIFTAPVGILSPVLINMLHLPTTE-RFLR 96
+ET+ K P IEF D Q +I +P I+S + + +LH P + R
Sbjct: 483 IETMVRYYKIPVLLIEFSQDKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRIVWSR 542
Query: 97 ALILCCQYYLQIADEMANRIIELEAKVRTPDCE-IIENEYR 136
+L +L + +V P + ++EN+ R
Sbjct: 543 SLHATADIFLSLKTNQDEPDESKAMRVGVPSEDGVVENDVR 583
>04_04_1167 +
31432731-31433769,31433893-31433941,31434363-31434427,
31435237-31435346,31436327-31436388,31438067-31438113,
31438148-31438272,31438651-31438764,31438852-31438979,
31439059-31439154,31439565-31439706,31439799-31439893,
31439966-31440095,31440179-31440323,31440430-31440656
Length = 857
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 208 LEVNRVFKSDIFNTVEHTLKTGYVGKMTKE 237
++VN++F + F+ V H YVG+ T E
Sbjct: 580 IQVNKIFSENAFDAVMHFAAVAYVGESTLE 609
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 6 EGVFGGLYEDGHWE---WNENTNTLHFISDLPPQPVETIQISTKAPTGAIE 53
+ V G LY D +E WN+ + ++++ PPQP S G+ E
Sbjct: 146 QSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSSE 196
>08_01_0208 +
1662101-1662223,1663130-1663243,1663327-1663468,
1663496-1663610,1663936-1664077,1664216-1664313,
1664396-1664525,1664740-1664884,1665163-1665389
Length = 411
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 209 EVNRVFKSDIFNTVEHTLKTGYVGKMTKE 237
+VN++F + F+ V H YVG+ T E
Sbjct: 134 QVNKIFAENAFDAVMHFAAVAYVGESTLE 162
>02_05_1213 -
34963971-34964658,34965030-34965270,34965347-34965736,
34966515-34966781,34966881-34967249,34967931-34968014,
34968113-34968226,34969952-34970018
Length = 739
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 3 DDEEGVFGGLYEDGHWEWNENTNTLHFISDLPPQPVETIQISTKAPTGA 51
DD G G W WN ++N F + P PV T++ S+ GA
Sbjct: 642 DDYHGALALDSGSGSW-WNRSSNPSGFFDNRNPLPVITMEYSSGRIEGA 689
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 19 EWNENTNTLHFISDLPPQPVETIQISTKAP---TGAIEFRDDVDL 60
+WN+ HFIS LPP V + S P G + F++ +D+
Sbjct: 667 DWNKGGIKKHFISKLPPVLVIHLMRSLLGPHKVIGHVRFKEILDM 711
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 11 GLYEDGHWEWNENTNTLHFISDLPPQPVETIQISTKAPTGAIEFRDDVDLIEQDVKD 67
G E+G W N+N ++ L QPV + + P I +D D + + V+D
Sbjct: 708 GRRENGFWN-NDNLTSISVPYMLHLQPVTVLTTALDVPPSEILNSEDTDSVYRSVED 763
>02_01_0009 +
58815-58884,59086-59156,59632-59725,59797-59864,
60145-60243,60538-60594,60943-61011,63111-63179,
63372-64322
Length = 515
Score = 27.9 bits (59), Expect = 10.0
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 106 LQIADEMANRIIELEAKVRTPDCEIIE---NEYRDNLADLRLLVAKEYCTILIGGGETRK 162
LQ+A M ++E+ K P C+I++ +Y+ ++ + L K I++ GGE ++
Sbjct: 89 LQLAARMDLDLVEVHRKSDPPVCKIMDFHKEKYKKDVKEKERLKTKS--AIVLRGGENKE 146
Query: 163 FHHMGPQ--KKRRSLSDKDARLFETLLRMCV 191
G K + +D RL E R+ V
Sbjct: 147 VRFKGKTELKDLKVKADGITRLMERGYRVKV 177
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.140 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,440,445
Number of Sequences: 37544
Number of extensions: 343510
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 10
length of query: 287
length of database: 14,793,348
effective HSP length: 81
effective length of query: 206
effective length of database: 11,752,284
effective search space: 2420970504
effective search space used: 2420970504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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