GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000939-TA|BGIBMGA000939-PA|undefined
         (287 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42621| Best HMM Match : L_lactis_RepB_C (HMM E-Value=1.8)           32   0.47 
SB_37320| Best HMM Match : GP46 (HMM E-Value=5)                        32   0.47 
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         31   1.1  
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)            31   1.4  
SB_10631| Best HMM Match : 7kD_coat (HMM E-Value=1.8)                  29   3.3  
SB_52011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)                   29   4.4  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      29   5.8  

>SB_42621| Best HMM Match : L_lactis_RepB_C (HMM E-Value=1.8)
          Length = 339

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 227 KTGYVGKMTKEERSVLFGNCIRYDKKLNTKSPLTNEVF 264
           + G  G M   E S  F NC+R+DKKL T      ++F
Sbjct: 182 QNGEPGPMFGREGSDAFANCVRFDKKLATTGCTKEDLF 219


>SB_37320| Best HMM Match : GP46 (HMM E-Value=5)
          Length = 555

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 227 KTGYVGKMTKEERSVLFGNCIRYDKKLNTKSPLTNEVF 264
           + G  G M   E S  F NC+R+DKKL T      ++F
Sbjct: 182 QNGEPGPMFGREGSDAFANCVRFDKKLATTGCTKEDLF 219


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 31/160 (19%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 107  QIADEMANRIIELEAKVRTPDCEIIENEYRDNLADL--RLLVAKEYCTILIGGGETRKFH 164
            + A+ +A+++  LE K++    E ++  YR+ + D   +L + K+     +G  +     
Sbjct: 953  EFAEHLASKVASLELKLQDTVAEEVQ-AYREEIKDFENQLEIEKQRAEQELGVLKEELTK 1011

Query: 165  HMGPQKKRRSLSDKDARLFETLLRMCVQVVWLALG-----RKSFNQIELEVNRVFKSDIF 219
                + +  + ++++ +L  T ++   + +          +KSF + + ++   F+++  
Sbjct: 1012 AEKERTETATRAEREKKLLTTTIQALTKELDKVKQQKKEMKKSFKRSKGDLQNSFENERK 1071

Query: 220  NTVEHTLKTGYVGKMTKEE--RSVLFGNCIRYDKKLNTKS 257
               +   K+  VGKM  EE  R  L    I+Y++++N  S
Sbjct: 1072 QFEDSLEKSKEVGKMLAEEVMREKLKNETIKYEERINEMS 1111


>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
          Length = 493

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 13  YEDGHWEWNENTNTL 27
           YE+G+W+WN  TNT+
Sbjct: 355 YENGYWDWNSITNTI 369


>SB_10631| Best HMM Match : 7kD_coat (HMM E-Value=1.8)
          Length = 276

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 217 DIFNTVEHTLKTGYVGKMTKEERSVL 242
           ++FN  EH  K G  G  TKE RS+L
Sbjct: 104 NVFNNSEHVSKAGKSGDTTKEGRSLL 129


>SB_52011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 18  WEWNENTNTLHFISDLPPQPVETIQISTKAPTGAIEFRDDVDLIEQDVKDIA 69
           W   E+ + +   +D+   P+E++  S +   GA   +D V + EQDV+ ++
Sbjct: 49  WTTTEDDDMVEINADVVIPPIESLSESEETQNGAEIDKDMVIITEQDVEKLS 100


>SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)
          Length = 262

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 23  NTNTLHFISDLPPQPVETIQISTKAPT 49
           NT TL+ + D+P +P +TI  S  +PT
Sbjct: 98  NTLTLYTLEDVPDRPPQTITFSFPSPT 124


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 23   NTNTLHFISDLPPQPVETIQISTKAPT 49
            NT TL+ + D+P +P +TI  S  +PT
Sbjct: 1521 NTLTLYTLEDVPDRPPQTITFSFPSPT 1547


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 198  LGRKSFNQIELEVNRVFKSDIFNTVEHTLKTGYVGKMTKEERSVLFGNCIRYDKKLNTKS 257
            L ++  N+++  V  VF     NT EH LK  +V        ++  G  I  D++ +T  
Sbjct: 1148 LMKRVHNEVQQSVEMVFVDATSNTEEHNLKV-FVMCTHNVSGALPLGILITSDERESTLK 1206

Query: 258  PLTNEVFCSRDVDYRVMGLGVIKCPQLVI 286
                E+ CS   +Y   G G    P++++
Sbjct: 1207 Q-GFEILCSCLPEYAFNGRGKENGPKVIL 1234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,801,497
Number of Sequences: 59808
Number of extensions: 397938
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 10
length of query: 287
length of database: 16,821,457
effective HSP length: 81
effective length of query: 206
effective length of database: 11,977,009
effective search space: 2467263854
effective search space used: 2467263854
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)