GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000939-TA|BGIBMGA000939-PA|undefined
         (287 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    32   0.54 
Z48809-2|CAA88747.1|  406|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z82082-10|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    29   2.9  
U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   3.8  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    29   5.0  
U23486-2|AAL38957.1|  318|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 12  LYEDGHWEWNENTNTLHFISDLPPQPVETIQISTKA 47
           LYE+  +EWN+     +  +  PP P  T+ I T A
Sbjct: 362 LYENPFYEWNQENRKRNERAQCPPSPQRTLGIQTSA 397


>Z48809-2|CAA88747.1|  406|Caenorhabditis elegans Hypothetical
           protein T01E8.4 protein.
          Length = 406

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 72  TAPVGILSPVLINMLHLPTTERFLRALILCCQYYLQIA--DEMANRIIELEAKVRTPDCE 129
           T  + + S +L ++       + +  + L C+ +  I   D+  +R I  E KVR PDCE
Sbjct: 7   TELISLPSELLCHLFTYLPQRQLITEIPLVCRRFNTILNDDKFWSRRIRTEQKVRLPDCE 66

Query: 130 IIENEY 135
           +   EY
Sbjct: 67  LKHPEY 72


>Z82082-10|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 84  NMLHLPTTERFLRALILCCQYYLQIADEMANRIIELEAKVRTPDCEIIENEYRDNL 139
           +M HLP+   F   L++   Y+   AD +A  +I    +VR  D   I  E   N+
Sbjct: 359 SMKHLPSMPIFADRLLMDAYYFFYEADCLAEIVIHHSHRVRQDDISFICKELFKNV 414


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 84  NMLHLPTTERFLRALILCCQYYLQIADEMANRIIELEAKVRTPDCEIIENEYRDNL 139
           +M HLP+   F   L++   Y+   AD +A  +I    +VR  D   I  E   N+
Sbjct: 224 SMKHLPSMPIFADRLLMDAYYFFYEADCLAEIVIHHSHRVRQDDISFICKELFKNV 279


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 84  NMLHLPTTERFLRALILCCQYYLQIADEMANRIIELEAKVRTPDCEIIENEYRDNL 139
           +M HLP+   F   L++   Y+   AD +A  +I    +VR  D   I  E   N+
Sbjct: 359 SMKHLPSMPIFADRLLMDAYYFFYEADCLAEIVIHHSHRVRQDDISFICKELFKNV 414


>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/66 (21%), Positives = 33/66 (50%)

Query: 200 RKSFNQIELEVNRVFKSDIFNTVEHTLKTGYVGKMTKEERSVLFGNCIRYDKKLNTKSPL 259
           R+ F  +++ + ++ +SD+ + +EH       G  T+  R+   G  I   ++L  +   
Sbjct: 279 RQHFKALKVILEKIGRSDLASKIEHIQYGRVRGLSTRNGRTEAVGEIIEKGRELALQFMK 338

Query: 260 TNEVFC 265
           +++ FC
Sbjct: 339 SSKTFC 344


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
           protein W03C9.6 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 213 VFKSDIFNTVEHTLKTGYVGKMTKEERSVLFGNCIRYDKKLNTKSPLTNEVFCSRDVDYR 272
           +F + I NTV    +  Y+ ++ KE  +  FGN     K  +  S L   ++C R   ++
Sbjct: 55  MFIAAIENTVVGMSEWPYMNQIDKEADAQFFGNATAASKLFHAISALVFAIWCHRFQSFQ 114

Query: 273 V 273
           +
Sbjct: 115 I 115


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 57   DVDLIEQDVKDIAIFTAPVGILSPVLINMLHLPTTERFLRALILCCQYYLQIADEMANRI 116
            D D + Q+++D    T  + +L+ V I   HL  ++R  R+L    Q  +   D+    +
Sbjct: 1467 DRDAMSQELRDRE--TRVLSLLNEVDIMKEHLEESDRVRRSLQQELQDSISNKDDFGKNV 1524

Query: 117  IELEAKVRTPDCEIIENEYRDNLADL 142
             ELE   R+ + E+  N+ R  + +L
Sbjct: 1525 HELEKAKRSLEAEL--NDMRVQMEEL 1548


>U23486-2|AAL38957.1|  318|Caenorhabditis elegans Hypothetical
           protein F07F6.8 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 158 GETRKFHHMGPQKKRRSLSDKDARLFETLLRMCVQVVWLALGRKSFNQIELEVNRVFKSD 217
           G T+ FH  G  K+  ++  +D  LFE LL+   ++  +   RK     + E  + FK+D
Sbjct: 125 GITKFFHTKGQHKEVAAMIAEDGVLFEELLKSREEL--MEAVRKIVE--DEEFFKHFKND 180

Query: 218 IFNTVEHTLKTGYVGKMT 235
               +E+ LKT + G +T
Sbjct: 181 --GDIENKLKTVFGGSVT 196


>U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical
           protein F23F12.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 164 HHMGPQKKRRSLSDKDARLFETLLRMCVQVVWLALGRKSFNQIELEVNRVFKSDIFNTVE 223
           HH+   +   S++  +++L    L   ++  W+ +   S   ++LEV ++    I N ++
Sbjct: 240 HHLKSLRNCASVTLNNSKLTNQNLNWFLRE-WMEMSGASLRNVDLEVKQLDLPRIINGLK 298

Query: 224 HTLKTGYV 231
            T+K G +
Sbjct: 299 WTIKEGII 306


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,399,080
Number of Sequences: 27539
Number of extensions: 315261
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 10
length of query: 287
length of database: 12,573,161
effective HSP length: 81
effective length of query: 206
effective length of database: 10,342,502
effective search space: 2130555412
effective search space used: 2130555412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)