Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000938-TA|BGIBMGA000938-PA|IPR006575|RWD,
IPR010541|Protein of unknown function DUF1115,
IPR013881|Pre-mRNA-splicing factor 3, IPR004856|ALG6, ALG8
glycosyltransferase
(537 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family p... 110 2e-24
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 65 1e-10
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 34 0.27
At2g32860.2 68415.m04029 glycosyl hydrolase family 1 protein 31 1.9
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 30 3.4
At5g01510.1 68418.m00065 expressed protein contains Pfam domain,... 29 5.9
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 29 5.9
At4g38810.2 68417.m05495 calcium-binding EF hand family protein ... 29 7.7
>At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family
protein similar to SP|P40351 Dolichyl pyrophosphate
Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC
2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Saccharomyces cerevisiae};
contains Pfam profile PF03155: ALG6, ALG8
glycosyltransferase family
Length = 383
Score = 110 bits (265), Expect = 2e-24
Identities = 46/91 (50%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 178 SHSTDFEVHRNWLAITNNVSVEEWYYESTSEWTLDYPPLFAWLEYGLSIVAKYFDPKMIK 237
S STDFEVHRNWLAITN++ + +WY++ TS+WTLDYPP FA+ E LSI A+ DP+++
Sbjct: 30 SRSTDFEVHRNWLAITNSLPLTKWYFDETSQWTLDYPPFFAYFERFLSIFARLVDPRIVD 89
Query: 238 IEN-LNYKSDMAVLFQRLSVIFLDFVYIFSV 267
+++ L+Y ++ + FQR+SVI D ++ V
Sbjct: 90 LQSGLDYNAESVIYFQRISVIVSDLCLLYGV 120
Score = 92.3 bits (219), Expect = 7e-19
Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 286 KYGINIPKSEASMTGGLVQEYD-HSVLPSITPSFTFIMTCLSMMPALYKMWCLCADRRYR 344
K G I AS TGGLV + +VLP ITP TF M L++ P L K W ++
Sbjct: 248 KLGYEIQIPSASFTGGLVGDSSPFAVLPQITPLTTFAMVLLAISPCLIKAW-----KKPH 302
Query: 345 PICFIRCIVVCATCSFMLGWHVHEKAILMIIIPLSFLSVLGDVDGRLFILLSTVGHYSLF 404
R + TC F+ GWHVHEKA L IPL+ ++V D + + L+S V YSL+
Sbjct: 303 SGLVARWVAYAYTCGFLFGWHVHEKASLHFTIPLAIVAVQSLEDAKHYFLVSIVSCYSLY 362
Query: 405 PLLY 408
PLLY
Sbjct: 363 PLLY 366
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 65.3 bits (152), Expect = 1e-10
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 177 PSHSTDFEVHRNWLAITNNVSVEEWY----YESTSEWTLDYPPLFAWLEYGLSIVAKYFD 232
P DFE R+W+ IT N+ V +WY Y + W LDYPPL A+ Y I ++F+
Sbjct: 67 PPKFGDFEAQRHWMEITTNLPVIDWYRNGTYNDLTYWGLDYPPLTAYQSYIHGIFLRFFN 126
Query: 233 PKMIK-IENLNYKSDMAVLFQRLSVIFLDFVYIFSVKSIYFIV 274
P+ + + + ++S + L R +V+ D +IF +++F++
Sbjct: 127 PESVALLSSRGHESYLGKLLMRWTVLSSD-AFIFFPAALFFVL 168
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 33.9 bits (74), Expect = 0.27
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 89 GFCLPGKPGIVCIEGETKDCEDWWREIKCLN 119
GF L GKP C G TK C W R + C+N
Sbjct: 138 GFILDGKPLKACF-GTTKYCHAWLRNVACVN 167
>At2g32860.2 68415.m04029 glycosyl hydrolase family 1 protein
Length = 614
Score = 31.1 bits (67), Expect = 1.9
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 174 AKQPSHSTDFEVHRNWLAITNNVSVEEWYYESTSEWTLDYPPLFAWLEYGLS-IVAKYFD 232
+ Q ++ TD V NW ITNN+S+ + ++TS + YP A L+ L I +Y D
Sbjct: 420 SSQLNYETDLRV--NWTVITNNLSLPD--LQTTSMGIVIYP---AGLKNILKHIKDEYMD 472
Query: 233 PKMIKIEN 240
P++ +EN
Sbjct: 473 PEIYIMEN 480
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 116 KCLNWQKLVIQKSEVLE-CLENDRKFTNFEELQFQSNNNTKFSNMKPNWP 164
+C + +Q + + C + D +F+N EELQ NN+ PN P
Sbjct: 149 QCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
>At5g01510.1 68418.m00065 expressed protein contains Pfam domain,
PF04884: Protein of unknown function, DUF647
Length = 509
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 167 VLHLEAAAKQPSHSTDFEVHRNWLAITNNVSVEEWYYESTSEWTLDYPPLFAWLEYGLSI 226
+L L K S F+V+ + + W E+ E D +F WL+ LS
Sbjct: 411 ILTLNKLNKDTEFSVSFKVNATSRDVLRCLWQAYWLEENMEESFKDKDSVFHWLKQSLSE 470
Query: 227 VAKYFDPKMIKIENLNY 243
+ FD + K++ +
Sbjct: 471 MDNKFDDFLFKLDTAGW 487
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 89 GFCLPGKPGIVCIEGETKDCEDWWREIKCLNWQKLVIQK 127
GF L GK C G TK C W R + C N L + +
Sbjct: 180 GFILDGKALKACF-GTTKYCHAWLRNVACNNQDCLYLHE 217
>At4g38810.2 68417.m05495 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 375
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 121 QKLVIQKSEVLECLENDRKFTNFEELQFQSNNNTKFSNMK-PNWPVAVLHLEAAAKQPSH 179
Q+ V+ S+++E +EN++ F F E +FQ + + + AV + AA P+
Sbjct: 11 QQQVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQ 70
Query: 180 ST 181
T
Sbjct: 71 GT 72
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.326 0.140 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,536
Number of Sequences: 28952
Number of extensions: 545928
Number of successful extensions: 1480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1471
Number of HSP's gapped (non-prelim): 10
length of query: 537
length of database: 12,070,560
effective HSP length: 85
effective length of query: 452
effective length of database: 9,609,640
effective search space: 4343557280
effective search space used: 4343557280
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)
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