GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000938-TA|BGIBMGA000938-PA|IPR006575|RWD,
IPR010541|Protein of unknown function DUF1115,
IPR013881|Pre-mRNA-splicing factor 3, IPR004856|ALG6, ALG8
glycosyltransferase
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537...   136   4e-32
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    39   0.009
08_01_0429 + 3767486-3768022,3768247-3768523,3769132-3769364,377...    30   5.3  

>02_05_0356 +
           28252154-28252897,28253171-28253377,28253473-28253710,
           28254853-28255220
          Length = 518

 Score =  136 bits (329), Expect = 4e-32
 Identities = 87/271 (32%), Positives = 131/271 (48%), Gaps = 12/271 (4%)

Query: 243 YKSDMAVLFQRLSVIFLDFVYIFSVKSIYFIVWTIFRPFESVTK-YGINIPKSEASMTGG 301
           Y   M  LF RL        + +   + +     + + F  + +  G NI   EAS TGG
Sbjct: 245 YYGQMQQLFNRLFPFGRGLCHAYWAPNFWVFYILLDKIFAFLLRRLGFNIQIPEASFTGG 304

Query: 302 LV-QEYDHSVLPSITPSFTFIMTCLSMMPALYKMWCLCADRRYRPICFIRCIVVCATCSF 360
           LV      +VLP +TP  TF++  L+M P L K     A  + +P   IR +    TC F
Sbjct: 305 LVGNSSPFAVLPKVTPITTFLLVILAMSPCLMK-----AFSKPQPRHIIRWVSYATTCGF 359

Query: 361 MLGWHVHEKAILMIIIPLSFLSVLGDVDGRLFILLSTVGHYSLFPLLYPKDLLSIKIFLL 420
           M GWHVHEKA L   IPL+ +++    D + + +LS V  YSLFPLL+      IK+ LL
Sbjct: 360 MFGWHVHEKASLHFTIPLALIAMDSLEDAKHYFVLSIVSCYSLFPLLFENQEYPIKVMLL 419

Query: 421 LTHVAIVF----GNVPALYTVETKATKKRRRRFMRLPMIGPFESIYIYGLILLCVYENML 476
           LT+  +++     +  A    E K   +      +   IG     Y+ G++ + ++  + 
Sbjct: 420 LTYATLMWVGFSSHFAAKSPQEGKKVNESGSVVRKNSFIGWISFSYLLGIVAIELWSQVF 479

Query: 477 HVAWGLDKTLPFLPLMMTSTYCALGVFYFWI 507
           H  +      PFLPL+M S YC +G+ Y W+
Sbjct: 480 H-HYVFGSRFPFLPLIMVSLYCGVGMMYSWM 509



 Score = 75.8 bits (178), Expect = 8e-14
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 180 STDFEVHRNWLAITNNVSVEEWYYESTSEWTLDYPPLFAWLEYGLSIVAKYFDPKMIKIE 239
           STDF+VHR WLA+T+ +    WY +++S+WTLDYPP FA+    L++ A   D  ++ + 
Sbjct: 33  STDFDVHRYWLALTHALPARRWYTDASSQWTLDYPPFFAYFSRLLALPAPLVDASLVSLP 92

Query: 240 NLNYKSDMA-VLFQRLSVIFLDFVYIFS 266
             +     A +L+ RL+V F D + + S
Sbjct: 93  VPDAPPSFAYLLYLRLTVAFSDLLLLLS 120


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 182 DFEVHRNWLAITNNVSVEEWYYESTSE----WTLDYPPLFAW 219
           D+E  R+W+ +T ++   +WY  +++     W LDYPPL A+
Sbjct: 169 DYEAQRHWMELTLHLPSSDWYRNTSANDLAYWGLDYPPLSAY 210



 Score = 31.1 bits (67), Expect = 2.3
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 366 VHEKAILMIIIPLSFLSVLGDVDGRLFILLSTVGHYSLFPLLYPKDLLSIKIFLLLTHVA 425
           VHEK+IL+ ++P S L++    +  L+  L   G +S++PL+    LL   I +L   V 
Sbjct: 351 VHEKSILLPLLPASLLAL---QEPHLYGWLMYFGLFSMYPLICRDHLLLQYIAVLGLFVL 407

Query: 426 IVF 428
           I +
Sbjct: 408 IYY 410


>08_01_0429 +
           3767486-3768022,3768247-3768523,3769132-3769364,
           3773221-3773625,3773717-3773755
          Length = 496

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 458 FESIYIYGLILLCVYENMLHVAWGLDKTLPFLPLMMTSTYCALGV------FYFWIK 508
           F ++ IYG+ LL V+ +  H A      LP L L     +  +GV       +FW+K
Sbjct: 428 FSALVIYGIYLLAVHADPTHSASVPALALPSLGLTWEGVFGLIGVLVSFGHLFFWVK 484


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,285
Number of Sequences: 37544
Number of extensions: 622820
Number of successful extensions: 1609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 5
length of query: 537
length of database: 14,793,348
effective HSP length: 85
effective length of query: 452
effective length of database: 11,602,108
effective search space: 5244152816
effective search space used: 5244152816
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)