Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000938-TA|BGIBMGA000938-PA|IPR006575|RWD,
IPR010541|Protein of unknown function DUF1115,
IPR013881|Pre-mRNA-splicing factor 3, IPR004856|ALG6, ALG8
glycosyltransferase
(537 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28) 112 6e-25
SB_52187| Best HMM Match : HNF-1A_C (HMM E-Value=1.8) 33 0.76
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.76
SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3
SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67) 31 1.8
SB_24115| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_51687| Best HMM Match : EMP70 (HMM E-Value=0) 31 2.3
SB_34802| Best HMM Match : SBP (HMM E-Value=7.9) 31 2.3
SB_29373| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3
SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_58849| Best HMM Match : zf-piccolo (HMM E-Value=2.8) 31 3.1
SB_41317| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 30 4.1
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 30 4.1
SB_28927| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3) 30 4.1
SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07) 30 4.1
SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 30 4.1
SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_47983| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_29837| Best HMM Match : MobC (HMM E-Value=6.8) 30 5.4
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_30130| Best HMM Match : Cadherin (HMM E-Value=0.0035) 30 5.4
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18) 29 7.1
SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39) 29 9.4
SB_33077| Best HMM Match : R3H (HMM E-Value=0.38) 29 9.4
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 29 9.4
SB_13523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
Length = 561
Score = 112 bits (270), Expect = 6e-25
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 6 INSQLQEFMKTINRGELCLYTIITWIQEHIEDIKLSEVLPAEETNTSKLFDEK--FSRLW 63
+N L + M+T+ GEL + +I W++EH L A + N + K F RLW
Sbjct: 112 LNHDLFKAMETLEEGELWILPVIQWLKEHAGSYLKESCLKATDDNKHVDQETKGSFMRLW 171
Query: 64 VYSHHIYNXXXXXXXXXXXXELNLTGFCLPGKPGIVCIEGETKDCEDWWREIKCLNWQKL 123
+Y HHIYN + LTGFCLPGKPG+VCIEGE + E+++ ++ LNW+K+
Sbjct: 172 MYMHHIYNKTKRKVILEWSSDYCLTGFCLPGKPGVVCIEGEEGNVEEYYGRLRRLNWKKI 231
Query: 124 VIQKSEV---LECLENDRKFTNFEELQFQ 149
+ E L ++ RKF F EL F+
Sbjct: 232 TCRHRETNNKLLDIDGQRKFIGFHELSFE 260
>SB_52187| Best HMM Match : HNF-1A_C (HMM E-Value=1.8)
Length = 193
Score = 32.7 bits (71), Expect = 0.76
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEAAAKQPSHSTDFEVHRN 188
+E +++ NF ++ F N NT KP+ P+ +H E+ PS V N
Sbjct: 69 IEANKRVVNFLDVTFDLNRNTYQPFTKPSAPLQYVHRESNTHLPSQRISLPVSTN 123
>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 32.7 bits (71), Expect = 0.76
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 402 SLFPLLYPKDLLSIKIFLLLTHVAIVFGNVPALYTVETKATKKRRRRFMRLPMIGPFESI 461
S+ PL+ KDLLSI+ L T + +F N L + +T+KR + + +
Sbjct: 1949 SMAPLM-KKDLLSIQTNLTETELLDIFENATFLLRIRESSTRKRENDDRKRNDLKTISRV 2007
Query: 462 YIYGLILLCVYENMLHVAWGLDKTLPF 488
+ N L V WG KT PF
Sbjct: 2008 EQF-------ENNTLSVPWGRTKTEPF 2027
>SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 31.9 bits (69), Expect = 1.3
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 334 MWCLCADRRYRPICFIRCIVVCATCSFMLGWHVHEKAILMIIIP 377
+W C +Y IRC V A C F G E + + +P
Sbjct: 525 VWARCPKHKYHGYKVIRCAVAAAVCHFHAGASSRENVMRRLCVP 568
>SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)
Length = 336
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 127 KSEVLECLENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
K E+ +E +++ NF ++ F N N + KPN P+ +H E+
Sbjct: 4 KKELRITIEANKRVVNFLDVTFDLNRNPYQPSTKPNAPLQYVHRES 49
>SB_24115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 67 HHIYNXXXXXXXXXXXXELNLTGFCLPGKPGIVCIEGETKDCEDWWREIKCLNWQKLVIQ 126
HH+Y+ E+ L G L VC+ + + C ++ + ++C N QK V +
Sbjct: 186 HHLYSTFSDTPKHCPKAEVYLFGKWLRTNQRRVCMFTDPESCLEYDKRMECYNLQKDVEE 245
Query: 127 KSEVLEC 133
+++ +C
Sbjct: 246 CNKIWKC 252
>SB_51687| Best HMM Match : EMP70 (HMM E-Value=0)
Length = 392
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 474 NMLHVAWGLDKTLP---FLPLMMTSTYCALGVFYFWIKYYHYFLTFN 517
N ++WG + L F+P +M Y + VF FW ++H +L N
Sbjct: 327 NRKAMSWGYQRRLNIVGFIPALMYFGYTIIMVFTFWALHWHNWLLHN 373
>SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)
Length = 283
Score = 31.1 bits (67), Expect = 2.3
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 67 HHIYNXXXXXXXXXXXXELNLTGFCLPGKPGIVCIEGETKDCEDWWREIKCLNWQKLVIQ 126
HH+Y+ E+ L G L VC+ + + C ++ + ++C N QK V +
Sbjct: 186 HHLYSTFSDTPKHCPKAEVYLFGKWLRTNQRRVCMFTDPESCLEYDKRMECYNLQKDVEE 245
Query: 127 KSEVLEC 133
+++ C
Sbjct: 246 CNKIWRC 252
>SB_29373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 126 QKSEVLECLEN--DRKFTNFEELQFQSNNNTKFSNMKP 161
++SE+ C+ N RKF E Q Q +N TK N P
Sbjct: 31 EESEICTCMSNGISRKFLGVTEHQHQKHNETKAKNKDP 68
>SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 30.7 bits (66), Expect = 3.1
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 66 SHHIYNXXXXXXXXXXXXELNLTGFCLPGKPGIVCIEGETKDCEDWWREIKCLNWQKLVI 125
SHH+Y+ E+ L G L VC+ + ++C + + +C N QK V
Sbjct: 209 SHHLYSTFSDTPKHCPKAEVYLFGKWLKTNQRRVCMFTDPENCLSYEKWEECYNLQKDVE 268
Query: 126 QKSEVLEC 133
+ +++ +C
Sbjct: 269 ECNKIWKC 276
>SB_58849| Best HMM Match : zf-piccolo (HMM E-Value=2.8)
Length = 243
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 137 IEANKRIVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 175
>SB_41317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 67 HHIYNXXXXXXXXXXXXELNLTGFCLPGKPGIVCIEGETKDCEDWWREIKCLNWQKLVIQ 126
HH+Y+ E+ L G L VC+ + ++C + + +C N QK V +
Sbjct: 210 HHLYSTFSDTPKHCPKAEVYLFGKWLKTNQRRVCMFTDPENCRSYEKWEECYNLQKDVEE 269
Query: 127 KSEVLEC 133
+++ +C
Sbjct: 270 CNKIWKC 276
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 302 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 340
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 690 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 728
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 1248 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 1286
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 30.3 bits (65), Expect = 4.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 149 QSNNNTKFSNMKPNWPVAVLHLEAAAKQPSHSTDFEVH 186
Q K S ++P P V E A KQP+H DF V+
Sbjct: 1116 QDTGQPKQSEVEPVSPTPVRRSERARKQPTHLQDFVVY 1153
>SB_28927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 66 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 104
>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
Length = 466
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 354 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 392
>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
Length = 301
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 175 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQCVHRES 213
>SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 223 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 261
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 30.3 bits (65), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 907 IEANKRVVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 945
>SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 29.9 bits (64), Expect = 5.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 403 LFPLLYPKDLLSIKIFLLLTHVAIVFGNVPALYTVETKATKKRRR 447
LFP +YP DLL+I TH+ ++ + LY V + K+ R+
Sbjct: 228 LFPQIYPGDLLAID---FPTHICLLILTIHFLYYVILELVKRYRK 269
>SB_47983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 66 IEANKRVVNFLDVTFDLNRNTYQPFTKPNDPLQYVHRES 104
>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
Length = 327
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 125 IQKSEVLECLENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+QK + ++ NF ++ F N NT KPN P+ +H E+
Sbjct: 4 LQKQRTANHHRSQKRVVNFLDVTFDLNRNTYQLFTKPNAPLQYVHRES 51
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 192 ITNNVSVEEWYYESTSEWTLDYP-PLFAWLEYGLSI 226
+T+N+SV +Y+ + EW Y + AW YG S+
Sbjct: 840 VTSNISVSSTWYQFSLEWNKVYELSVTAWNTYGESV 875
>SB_30130| Best HMM Match : Cadherin (HMM E-Value=0.0035)
Length = 391
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N+NT KPN P+ +H E+
Sbjct: 42 IEANKRVFNFLDVTFDLNHNTYQPFTKPNAPLQYVHRES 80
>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 135 ENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 44 EANKRVVNFLDVTFDLNRNTYQPFFKPNAPLQYVHRES 81
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 126 QKSEVLECLENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+K + C N R NF ++ F N NT KPN P+ +H E+
Sbjct: 135 RKCGIAPCPANKR-VVNFLDVTFDLNRNTYQPFTKPNAPLQYVHRES 180
>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
Length = 417
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 124 VIQKSEVLECLENDRKFTNFEELQFQSNNNTKF-SNMKPN 162
V++K E+ E L ND+KF + E + +S++ K N K N
Sbjct: 273 VLEKQEINEKLRNDKKFADDFEKEMESSSQGKHQQNKKQN 312
>SB_41921| Best HMM Match : 7tm_1 (HMM E-Value=2e-39)
Length = 335
Score = 29.1 bits (62), Expect = 9.4
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 192 ITNNVSVEEWYYESTSEWTLD--YPPLFAWLEYGLSI-----VAKYFDPKMIKIENLNYK 244
+ +VSV W Y S EWT++ F +Y ++ + + + I Y
Sbjct: 76 LVGSVSVPLWIYISLQEWTVNEGVDLFFVSFDYVTALSSALHLTVIALERWVAISRPFYH 135
Query: 245 SDMAVLFQRLSVIFLDFVYIFSVKSIYFIVWTIFR 279
+ + L+++++ ++ F V YFI W I R
Sbjct: 136 QTLTRFYYILALLYI-WIMAFVVSGCYFIGWAIKR 169
>SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)
Length = 332
Score = 29.1 bits (62), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ NF ++ F N NT KPN P+ +H E+
Sbjct: 76 IEANKRVVNFLDVTFDLNCNTYQPFTKPNAPLQYVHRES 114
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 29.1 bits (62), Expect = 9.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 205 STSEWTLDYPPLF-AWLEYGLSIVAKYFDPKMIKIE 239
S EW D P + AWL+ +V K DP IK++
Sbjct: 1043 SDKEWNGDLPKISGAWLDNKFEMVDKTVDPNTIKLQ 1078
>SB_13523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.1 bits (62), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 134 LENDRKFTNFEELQFQSNNNTKFSNMKPNWPVAVLHLEA 172
+E +++ N ++ F N NT S KPN P+ +H E+
Sbjct: 33 IEANKRVVNCLDVTFDLNRNTYQSFTKPNAPLQYVHRES 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.326 0.140 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,560
Number of Sequences: 59808
Number of extensions: 738619
Number of successful extensions: 2418
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2389
Number of HSP's gapped (non-prelim): 35
length of query: 537
length of database: 16,821,457
effective HSP length: 86
effective length of query: 451
effective length of database: 11,677,969
effective search space: 5266764019
effective search space used: 5266764019
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)
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