Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000938-TA|BGIBMGA000938-PA|IPR006575|RWD,
IPR010541|Protein of unknown function DUF1115,
IPR013881|Pre-mRNA-splicing factor 3, IPR004856|ALG6, ALG8
glycosyltransferase
(537 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical p... 97 4e-20
Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical p... 92 8e-19
Z46676-6|CAA86666.1| 503|Caenorhabditis elegans Hypothetical pr... 67 3e-11
Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical pr... 34 0.22
AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 34 0.22
AF016452-18|AAB66009.1| 405|Caenorhabditis elegans Hypothetical... 34 0.22
Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical pr... 31 2.7
>Z54342-12|CAA91145.2| 758|Caenorhabditis elegans Hypothetical
protein C08H9.3a protein.
Length = 758
Score = 96.7 bits (230), Expect = 4e-20
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 180 STDFEVHRNWLAITNNVSVEEWYYESTSEWTLDYPPLFAWLEYGLSIVAKYFD-PKMIKI 238
STDFEVHRNW+A+T + EWY E+TSEWTLDYPP FA+ E GL+ VA +F + + I
Sbjct: 27 STDFEVHRNWMAVTWQRPLCEWYTEATSEWTLDYPPFFAYFELGLASVAHFFGFDECLVI 86
Query: 239 ENLNYKSDMAVLFQRLSVIFLDFVYIFSVKSIY 271
S ++FQR SVIF D +YI +V ++Y
Sbjct: 87 SKTPRFSRRILIFQRFSVIFCDILYI-AVCALY 118
Score = 79.4 bits (187), Expect = 6e-15
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 289 INIPKSEA-SMTGGLVQEYDHSVLPSITPSFTFIMTCLSMMPALYKMWCLCADRRYRPIC 347
+ I K +A + T GLVQEY HSVLP+++P T + +S M L + RR
Sbjct: 296 LKIGKFDAPTYTSGLVQEYSHSVLPNVSPMGTLCLVVISSMIVLTGL----VIRRKDSAD 351
Query: 348 FIRCIVVCATCSFMLGWHVHEKAILMIIIPLSFLSVLGDVDGRLFILLSTVGHYSLFPLL 407
F V A C F G+HVHEKAI+++ +P++ ++ + I L+ + +SLFPLL
Sbjct: 352 FSLFAVFSAFCFFYFGYHVHEKAIILVTVPMTVFAIKNPKYHSILIHLTCIASFSLFPLL 411
Query: 408 YP--KDLLSIKIFLLLTHVAIVF 428
+ + LL I + + +VF
Sbjct: 412 FTPFETLLKYAICVSYFFIQLVF 434
>Z54342-13|CAH60747.1| 123|Caenorhabditis elegans Hypothetical
protein C08H9.3b protein.
Length = 123
Score = 92.3 bits (219), Expect = 8e-19
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 180 STDFEVHRNWLAITNNVSVEEWYYESTSEWTLDYPPLFAWLEYGLSIVAKYFD-PKMIKI 238
STDFEVHRNW+A+T + EWY E+TSEWTLDYPP FA+ E GL+ VA +F + + I
Sbjct: 27 STDFEVHRNWMAVTWQRPLCEWYTEATSEWTLDYPPFFAYFELGLASVAHFFGFDECLVI 86
Query: 239 ENLNYKSDMAVLFQRLSVIFLDFVYI 264
S ++FQR SVIF D + +
Sbjct: 87 SKTPRFSRRILIFQRFSVIFCDILLL 112
>Z46676-6|CAA86666.1| 503|Caenorhabditis elegans Hypothetical
protein C08B11.8 protein.
Length = 503
Score = 66.9 bits (156), Expect = 3e-11
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 168 LHLEAAAKQPSHSTDFEVHRNWLAITNNVSVEEWYYESTSE----WTLDYPPLFAWLEYG 223
L+ + QP D+E R+W+ IT N+ +E+WY T W LDYPP+ A+ Y
Sbjct: 65 LNPHSGESQPPMYGDYEAQRHWMEITVNLPIEQWYLNGTHNDLLYWGLDYPPITAYHHYL 124
Query: 224 LSIVAKYFDPKMIKI-ENLNYKSDMAVLFQRLSVIFLDFVYIFSVKSIYF 272
L +++ + K +++ + Y+S LF RLS I +++ YF
Sbjct: 125 LGVISNKINKKWVELTTSRGYESIAHKLFMRLSAIIPFYIFYLPPLIFYF 174
>Z68160-4|CAA92292.1| 583|Caenorhabditis elegans Hypothetical
protein D1046.4 protein.
Length = 583
Score = 34.3 bits (75), Expect = 0.22
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 313 SITPSFTFIMTCLSMMPALYKMWCLCADRRYRPICFIRCIVVCATCSFMLGWHV 366
SI S F+M+ L + A+Y W L YR IC C++ +F L W +
Sbjct: 100 SIKQSIMFMMSPLGSLLAMYPTWMLIMKFGYRRICSTTCLISTFLTAF-LPWSI 152
>AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical
protein Y48G10A.2 protein.
Length = 375
Score = 34.3 bits (75), Expect = 0.22
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 353 VVCATCSFMLGWHVHEKAILMIIIPLSFLSVLGDVDGRL 391
V+C C+F LG H H KA L+ L+FL+ ++ G+L
Sbjct: 92 VLCGACAF-LGDHAHHKAYLLKADKLAFLTASREIGGKL 129
>AF016452-18|AAB66009.1| 405|Caenorhabditis elegans Hypothetical
protein T05H4.2 protein.
Length = 405
Score = 34.3 bits (75), Expect = 0.22
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 110 DWWREIKC---LNWQKLVIQKSEVLECLENDRKFT-NFEEL-QFQSNNNTKFSNMKPNWP 164
DW+ + L + K I + ++CLE+D +FT N L Q++ N K S + PN+P
Sbjct: 247 DWFHTFEITVLLKYFKPGILEDLTIKCLESDEEFTGNLVYLEQWKKAKNLKLSKV-PNFP 305
Query: 165 VAVLHLE 171
+ V HL+
Sbjct: 306 IIVEHLD 312
>Z81514-6|CAB62802.1| 712|Caenorhabditis elegans Hypothetical
protein F26F2.7 protein.
Length = 712
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 459 ESIYIYGLILLCVYENMLHVAWGLDKTLPFLPLMMTSTYCALGVFYFWIKYYHYFLT-FN 517
E +I+ L+ + + NM V W +D +P ++ C F W+K H F+T FN
Sbjct: 376 ERFHIFALLFVVMIRNMTAVNWNIDSFTEMIPDIIMVVGCE--YFVDWLK--HAFITKFN 431
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.140 0.450
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,292
Number of Sequences: 27539
Number of extensions: 601188
Number of successful extensions: 1871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 12
length of query: 537
length of database: 12,573,161
effective HSP length: 85
effective length of query: 452
effective length of database: 10,232,346
effective search space: 4625020392
effective search space used: 4625020392
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)
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