GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000938-TA|BGIBMGA000938-PA|IPR006575|RWD,
IPR010541|Protein of unknown function DUF1115,
IPR013881|Pre-mRNA-splicing factor 3, IPR004856|ALG6, ALG8
glycosyltransferase
         (537 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   4.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 110 DWWREIKCLNWQKLVIQKSEVL 131
           DWW++I  LN + L +    VL
Sbjct: 340 DWWKDIMLLNEKTLAVPAPPVL 361


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 110 DWWREIKCLNWQKLVIQKSEVL 131
           DWW++I  LN + L +    VL
Sbjct: 340 DWWKDIMLLNEKTLAVPAPPVL 361


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 110 DWWREIKCLNWQKLVIQKSEVL 131
           DWW++I  LN + L +    VL
Sbjct: 340 DWWKDIMLLNEKTLAVPAPPVL 361


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 210 TLDYPPLFAWLEYG 223
           +L  PPLF W  YG
Sbjct: 28  SLSLPPLFGWGSYG 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,802
Number of Sequences: 429
Number of extensions: 7100
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 537
length of database: 140,377
effective HSP length: 61
effective length of query: 476
effective length of database: 114,208
effective search space: 54363008
effective search space used: 54363008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)