GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000937-TA|BGIBMGA000937-PA|IPR000257|Uroporphyrinogen
decarboxylase (URO-D), IPR006361|Uroporphyrinogen decarboxylase HemE
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...   184   2e-47
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    34   0.030
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    29   0.64 
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    29   0.64 
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    29   1.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   5.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.9  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score =  184 bits (447), Expect = 2e-47
 Identities = 89/147 (60%), Positives = 114/147 (77%), Gaps = 2/147 (1%)

Query: 11  LKNDRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPELACEVTLQPL 70
           +KND +LRAA G+ V++ PVW+MRQAGRYLPE+ ++R K  FF +C+TPE ACE+TLQP+
Sbjct: 1   MKNDLILRAAKGEEVERPPVWIMRQAGRYLPEYHKLRAKQSFFEMCQTPETACELTLQPV 60

Query: 71  RRYEH-LDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVS-RL 128
            R++  LDA+IIFSDILVIPQALGM V M    GP FPKPL  P +ID L+    +S +L
Sbjct: 61  TRFKGLLDAAIIFSDILVIPQALGMQVVMLEQKGPHFPKPLVVPEDIDLLEKTPNISAKL 120

Query: 129 DYVGKAITLTRHKIDGKVPLIGFTGAP 155
            YV  AI+LTR K+DG+VPL+GF+GAP
Sbjct: 121 GYVMDAISLTREKLDGQVPLMGFSGAP 147



 Score =  147 bits (357), Expect = 2e-36
 Identities = 77/156 (49%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 156 VESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAG 215
           V +GAQLLQ+F+S A  LS E FTE++ PYL  I   V+  L +K  ++VPM +FAKGA 
Sbjct: 196 VYAGAQLLQIFDSWAGELSPEDFTEYAYPYLVRICQEVKQHLKKKKRDEVPMIVFAKGAW 255

Query: 216 HSLDIQAQLGYETIGLDWTVDPTEARKIVG-ENITLQGNLDPQDLYKTPEEIKTLTTEMV 274
           +++D     GY+ IGLDWTV P EA +I G   +T QGNLDP  LY T E I+  T EM+
Sbjct: 256 YAIDQLCDSGYDVIGLDWTVSPKEAVRIRGNRRVTFQGNLDPNILYGTREIIEARTKEMI 315

Query: 275 KKF--GKHRYIANLGHGITPQTPLESMTVFTETVHE 308
           + F  GK  YI NLGHGITP    + +  F E  H+
Sbjct: 316 QDFGGGKQGYIINLGHGITPGVNPDDVRFFLEKCHQ 351


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 137  LTRHKIDGKVPLIGFTGAPVESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAK 196
            + R  +  ++  +G      E G + LQ+FES  D+  +  F ++ +P    +    R +
Sbjct: 2220 IVRMTLKKQLEHLGMDVDAAEDGKETLQIFESHPDNYYQVCFVDYHMPVYDGLEVTRRMR 2279

Query: 197  LTEKSLEQVPMTIFAKGAGHSLDIQAQLGYETIGL 231
              E+     P+ IFA  A     ++ Q  ++ +G+
Sbjct: 2280 KIERKHGCAPLPIFALTADMQPTMETQ--FQEVGI 2312


>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
          L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 2  EYSNKNFPELKNDRL-LRAALGKSVDKVP--VWVMRQAGRYLPEFQEVRVKHDFFTVCRT 58
          E +     EL+  +L L  +LG+S D++     V+ Q     P F + R     F + R 
Sbjct: 3  EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 59 PELACEVTLQPLRRYEHLDASI 80
           ++AC VT++  +  E L+  +
Sbjct: 63 EKIACHVTVRGPKAEEILERGL 84


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
          L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 2  EYSNKNFPELKNDRL-LRAALGKSVDKVP--VWVMRQAGRYLPEFQEVRVKHDFFTVCRT 58
          E +     EL+  +L L  +LG+S D++     V+ Q     P F + R     F + R 
Sbjct: 3  EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 59 PELACEVTLQPLRRYEHLDASI 80
           ++AC VT++  +  E L+  +
Sbjct: 63 EKIACHVTVRGPKAEEILERGL 84


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 211 AKGAGHSLDIQ-AQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTL 269
           AKG G S+    AQ G   I    T DPTE  K + E   +Q +    D+ ++ + ++  
Sbjct: 30  AKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKKLAEETGVQVHTLKIDISRS-DTVEAG 88

Query: 270 TTEMVKKFGK-HRYIANLG 287
             E+ K F + H  +AN G
Sbjct: 89  VEEIQKIFKEIHVVVANAG 107


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 182 SIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLGYETIGLDWTVDPTEAR 241
           +IP +K   +G  AK+ EK   +    + A   G +  +Q++L  E +GL    + TE +
Sbjct: 107 NIPKMKFNTTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLGAVRERTEKQ 166

Query: 242 K 242
           +
Sbjct: 167 R 167


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 2   EYSNKNFPELKNDRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEV 46
           EY+ + FPE  N RL+   L   +++  V + ++   Y  EF+E+
Sbjct: 514 EYAKRKFPEALNSRLVTDFLNIFLERGSVQLFKEI--YQLEFREM 556


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,646
Number of Sequences: 5004
Number of extensions: 61065
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 8
length of query: 310
length of database: 2,362,478
effective HSP length: 73
effective length of query: 237
effective length of database: 1,997,186
effective search space: 473333082
effective search space used: 473333082
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)