Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000937-TA|BGIBMGA000937-PA|IPR000257|Uroporphyrinogen
decarboxylase (URO-D), IPR006361|Uroporphyrinogen decarboxylase HemE
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 113 2e-25
03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168... 85 7e-17
01_05_0741 - 24821208-24821220,24821476-24821711,24822276-248225... 81 8e-16
07_03_0556 + 19438394-19438537,19438638-19438747,19442018-194422... 31 1.2
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 28 8.3
05_01_0411 + 3243025-3243092,3243348-3243496,3243740-3243872,324... 28 8.3
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 28 8.3
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 8.3
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 113 bits (271), Expect = 2e-25
Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 5/148 (3%)
Query: 157 ESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGH 216
++GAQ +Q+F+S A LS F EFS+PYLK I V+ ++ ++P+ ++A G+G
Sbjct: 1057 DNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVK-----ETHPELPLILYASGSGG 1111
Query: 217 SLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKK 276
L+ G + + LDWTVD E RK +G NI +QGN+DP L+ + E I + V+K
Sbjct: 1112 LLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFISKRIFDTVQK 1171
Query: 277 FGKHRYIANLGHGITPQTPLESMTVFTE 304
G ++ NLGHGI TP E++ F E
Sbjct: 1172 AGNSGHVLNLGHGIKVGTPEENVAHFFE 1199
Score = 58.8 bits (136), Expect = 5e-09
Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 60 ELACEVTLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGL 119
+L E++LQP + ++ D I+FSDIL + + ++ G GPV PL+T + ++ +
Sbjct: 913 DLVVEISLQPWKVFKP-DGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEV 971
Query: 120 QPEGAVSRLDYVGKAITLTRHKIDGKVPLIGFTGAPVESGAQLLQVFESSADHLSREQFT 179
+ + YVG+A+ + R +++ + ++GF GAP + ++ S+ + S+ +
Sbjct: 972 REFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVE--GGSSKNFSKIKKM 1029
Query: 180 EFSIP 184
FS P
Sbjct: 1030 AFSEP 1034
>03_02_0945 -
12614658-12614909,12615200-12615325,12616684-12616872,
12617059-12617169,12617629-12617744,12617861-12617966
Length = 299
Score = 85.0 bits (201), Expect = 7e-17
Identities = 57/207 (27%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 60 ELACEVTLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGL 119
+L E++LQP + + D +I+FSDIL + + ++ G G V PL+T + ++ +
Sbjct: 94 DLVVEISLQPWKVFTP-DGAILFSDILTPLPRMNIPFDIVKGKGSVIFDPLRTAAAVNEV 152
Query: 120 QPEGAVSRLDYVGKAITLTRHKIDGKVPLIGFTGAPVESGAQLLQVFESSADHLSREQFT 179
+ + YVG+A+ + R +I+ + ++ F GAP + ++ S+ + S+ +
Sbjct: 153 REFVPEEWVPYVGQALNILREEINNEATVLSFVGAPFTLASYCVE--GGSSKNFSKIKKM 210
Query: 180 EFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLGYETIGLDWTVDPTE 239
S P + D +++ ++P+ ++A G+G L+ G + + L TVD E
Sbjct: 211 ALSEPEIVD--------SVKETHPELPLILYASGSGGLLERLPLTGVDVVSLG-TVDMAE 261
Query: 240 ARKIVGENITLQGNLDPQDLYKTPEEI 266
RK +G NI +QGN+DP L+ + E I
Sbjct: 262 GRKRLGSNIAVQGNVDPGVLFGSKEFI 288
>01_05_0741 -
24821208-24821220,24821476-24821711,24822276-24822560,
24822790-24822850,24823399-24823463,24823571-24823959,
24824059-24824188
Length = 392
Score = 81.4 bits (192), Expect = 8e-16
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 16 LLRAALGKS-VDKVPVWVMRQAGRYLPEFQEVRVKHDFFTV-CRTPELACEVTLQPLRRY 73
L+RAA G+ + + P W+MRQAGRY+ E+Q + +H F T EL E+TLQP R +
Sbjct: 48 LVRAARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRAF 107
Query: 74 EHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVSRLDYVGK 133
D I+FSDIL A+G+ ++ GPV P+++ ++ L P +L +VG+
Sbjct: 108 AP-DGVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPID-FEKLRFVGE 165
Query: 134 AITLTRHKI 142
++ + R ++
Sbjct: 166 SLKILRTEL 174
Score = 75.4 bits (177), Expect = 6e-14
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 156 VESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAG 215
V SGAQ +Q+F+S L + ++S PY+K I + ++ + VP+ ++ G G
Sbjct: 278 VNSGAQCIQIFDSWGGQLPPHVWEQWSKPYIKQIVNKIKIECPN-----VPLVLYINGNG 332
Query: 216 HSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLY 260
L+ G + IGLDWTVD + R+ +G I++QGN+DP L+
Sbjct: 333 GLLERMTDTGVDVIGLDWTVDMADGRRRLGNKISVQGNVDPAFLF 377
>07_03_0556 +
19438394-19438537,19438638-19438747,19442018-19442288,
19442398-19442504,19442625-19443017,19443326-19443700,
19443799-19443877,19444745-19444957
Length = 563
Score = 31.1 bits (67), Expect = 1.2
Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 13/156 (8%)
Query: 150 GFTGAPVE-SGAQLLQVFESSAD-HLSREQFTEFSIPY-LKDIRSGVRAKLTEKSLEQVP 206
G T VE G+ +Q SS D HL + + D V + T K +
Sbjct: 249 GHTMTLVEVEGSHTMQTTYSSLDVHLGQSYSVLLTADQPAYDYAVVVSTRFTSKIISTTA 308
Query: 207 MTIFAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQG-NLDPQDLYKTPEE 265
+ ++ G S A G TI +DW+++ +AR I N+T G +PQ Y
Sbjct: 309 VLRYSGSGGKSP--AALPGGPTIQIDWSLN--QARSIRW-NLTASGPRPNPQGSYHYGMV 363
Query: 266 IKTLTTEMVKKF----GKHRYIANLGHGITPQTPLE 297
T T + GK RY N + P TPL+
Sbjct: 364 TTTRTIRLASSSATVNGKQRYSVNGVSHVNPDTPLK 399
>11_01_0574 +
4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 28.3 bits (60), Expect = 8.3
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 177 QFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLGYETIGLDWTVD 236
Q+ E LK++ + +K TEK+ ++V I +G + G TI +W +
Sbjct: 608 QYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICKFASGPKYEAYYSRGIPTITAEWLFE 667
Query: 237 PTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGK 279
K++ ++ L GN + + P + + +FGK
Sbjct: 668 CVRQNKLI--SVRLAGN---ASVNEEPNDPGVSKRRRLSEFGK 705
>05_01_0411 +
3243025-3243092,3243348-3243496,3243740-3243872,
3244740-3244860,3245065-3245181,3245303-3245389,
3245941-3246000,3246097-3246174,3246587-3246658,
3246767-3246925
Length = 347
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 229 IGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEI--KTLTTEMVKK 276
IG P E RK GE + L + DLY T E + KTLT + K
Sbjct: 292 IGTKGITKPKEVRKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSK 341
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 37 GRYLPEFQEVRVKHDF-FTVCRTPELACE-----VTLQPLRRYEHLDASIIFSDILVIP 89
GR+L + VK DF F+ + + E V+L RYE+L A IFS +L++P
Sbjct: 294 GRHLLSYMTSHVKMDFIFSSFKNGDSRKECAFYLVSLPVPFRYEYLMAETIFSQLLLLP 352
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 67 LQPLRRYEHLDASIIFSDILVIPQ-ALGMTVEMHPGVGPVFPKPLQTPSE 115
++PLR E L+A I LV+PQ +L + V + PV P + P+E
Sbjct: 170 IEPLRTLEPLEAQQISLPHLVVPQISLQLPVVLQSCAIPVAPIGVMQPTE 219
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,099,040
Number of Sequences: 37544
Number of extensions: 387297
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 11
length of query: 310
length of database: 14,793,348
effective HSP length: 82
effective length of query: 228
effective length of database: 11,714,740
effective search space: 2670960720
effective search space used: 2670960720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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