GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000937-TA|BGIBMGA000937-PA|IPR000257|Uroporphyrinogen
decarboxylase (URO-D), IPR006361|Uroporphyrinogen decarboxylase HemE
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2297| Best HMM Match : No HMM Matches (HMM E-Value=.)              134   9e-32
SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)                      30   2.8  
SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)                 29   4.8  

>SB_2297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score =  134 bits (324), Expect = 9e-32
 Identities = 86/214 (40%), Positives = 118/214 (55%), Gaps = 11/214 (5%)

Query: 103 GPVFPKPLQTPS-----EIDGLQPEGAVSR-LDYVGKAITLTRHKIDGKVPLIGFTGAPV 156
           G  F K +QTP       +  L     +S  L YV +AITLTRHK++GKVPL GFTGAP 
Sbjct: 87  GADFFKIVQTPEMACELTLQKLNQNANISEGLGYVYRAITLTRHKLEGKVPLFGFTGAPW 146

Query: 157 ESGAQLLQVFESSADHLSREQF---TEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKG 213
              + +++   S+    SR+      E S   L+ +   V   L  ++      T+FAKG
Sbjct: 147 TLMSYMIEGGGSTNFTKSRKWLYAHMEASSKLLQILTDAVVEHLVLQARAGA-QTVFAKG 205

Query: 214 AGHSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEM 273
           A +++   +Q GY+ + LDWT+   EAR IV   +TLQGNLDP  LY + E+I      M
Sbjct: 206 AHYAIKELSQCGYDVVSLDWTMSSKEAR-IVAPTVTLQGNLDPAALYGSHEDIVYAVKGM 264

Query: 274 VKKFGKHRYIANLGHGITPQTPLESMTVFTETVH 307
           V+ FG  RYIANLGHG+ P    + +  F +TVH
Sbjct: 265 VRGFGIQRYIANLGHGMHPDHDPDKLKTFIDTVH 298



 Score = 35.5 bits (78), Expect = 0.056
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 42  EFQEVRVKH--DFFTVCRTPELACEVTLQPLRRYEHLDASI 80
           EF++ + ++  DFF + +TPE+ACE+TLQ L +  ++   +
Sbjct: 78  EFRKFKEENGADFFKIVQTPEMACELTLQKLNQNANISEGL 118


>SB_7920| Best HMM Match : Sec15 (HMM E-Value=2.3)
          Length = 551

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 259 LYKTPEEIKTLTTEMVKKFGKHRYIANLGHGITPQTPLESMTVFTETVHE 308
           LY  P+EI T+  E   K+ +  YIA L      Q    S TV   T HE
Sbjct: 490 LYHNPDEILTVVVEQGAKYSETEYIALL------QLKARSQTVRDNTAHE 533


>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 119 LQPEGAVSRLDYVGKAITLTRHK--IDGKVPLIGFTGAPVES 158
           +QP+G V+ L  V KA  + +H+   + K+ ++ F G+P+ES
Sbjct: 62  VQPQGDVNFLTAVKKAHLVLKHRQGKNHKMRIVVFVGSPIES 103


>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
          Length = 1169

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 89   PQALGMTV---EMHPGVGP--VFPKPLQTPSEIDGLQPEGAVS-RLDYVGKAITLTRHKI 142
            PQAL   V   ++ PG GP  VFP P+   S I  L   G +S R+D  GK+I + R +I
Sbjct: 1000 PQALLKPVSAQDLSPGQGPARVFP-PVVKNSGIVYLMVLGGLSKRVDSYGKSIDMWRCQI 1058

Query: 143  D 143
            D
Sbjct: 1059 D 1059


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,393,720
Number of Sequences: 59808
Number of extensions: 436518
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 5
length of query: 310
length of database: 16,821,457
effective HSP length: 82
effective length of query: 228
effective length of database: 11,917,201
effective search space: 2717121828
effective search space used: 2717121828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)