GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000937-TA|BGIBMGA000937-PA|IPR000257|Uroporphyrinogen
decarboxylase (URO-D), IPR006361|Uroporphyrinogen decarboxylase HemE
         (310 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119238-1|AAM51098.1|  356|Drosophila melanogaster SD19419p pro...   246   2e-65
AE013599-885|AAF58922.1|  356|Drosophila melanogaster CG1818-PA ...   246   2e-65
AE014298-843|AAF46122.1| 1624|Drosophila melanogaster CG4320-PA ...    31   1.5  

>AY119238-1|AAM51098.1|  356|Drosophila melanogaster SD19419p
           protein.
          Length = 356

 Score =  246 bits (603), Expect = 2e-65
 Identities = 114/150 (76%), Positives = 131/150 (87%), Gaps = 1/150 (0%)

Query: 6   KNFPELKNDRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPELACEV 65
           K FP LKND LLRAA G+ VD+VPVWVMRQAGRYLPEFQE+R  HDFFTVCRTPELACEV
Sbjct: 5   KPFPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHDFFTVCRTPELACEV 64

Query: 66  TLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAV 125
           T+QPLRR++ LDASIIFSDILVIPQALG+TVEMH GVGPV P+P+  P ++  L P+GA+
Sbjct: 65  TMQPLRRFD-LDASIIFSDILVIPQALGLTVEMHAGVGPVLPQPIVVPEDLKRLTPDGAL 123

Query: 126 SRLDYVGKAITLTRHKIDGKVPLIGFTGAP 155
           SRL YVG AIT+ RHK++G+VPLIGFTGAP
Sbjct: 124 SRLSYVGDAITMMRHKLEGRVPLIGFTGAP 153



 Score =  233 bits (570), Expect = 2e-61
 Identities = 115/205 (56%), Positives = 148/205 (72%), Gaps = 8/205 (3%)

Query: 113 PSEIDGLQPEGAVSRLDYVGKAITLTRHKIDGKV-------PLIGFTGAPVESGAQLLQV 165
           P  + G   EG  S+     KA  L  H  D K+        ++ +    V++GAQ+LQV
Sbjct: 153 PWTLMGYMIEGGGSKTMSKAKA-WLNEHPEDSKLFLNLLTDAIVDYLEMQVKAGAQMLQV 211

Query: 166 FESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLG 225
           FESSA+HLS+EQF ++ +PYLK IR  +  +LT+K++  VP+T+FAKGAGHSL  Q++LG
Sbjct: 212 FESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTKKAIPVVPITLFAKGAGHSLKEQSELG 271

Query: 226 YETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGKHRYIAN 285
           Y+ IGLDWTVDP EAR +VG NITLQGNLDPQD+Y+ P+E++ LTTEMV KFGK RYIAN
Sbjct: 272 YDVIGLDWTVDPLEARNLVGPNITLQGNLDPQDMYRDPDELRNLTTEMVHKFGKSRYIAN 331

Query: 286 LGHGITPQTPLESMTVFTETVHEAI 310
           LGHGITPQTP+ SM V  E VH+A+
Sbjct: 332 LGHGITPQTPITSMEVLVEAVHKAL 356


>AE013599-885|AAF58922.1|  356|Drosophila melanogaster CG1818-PA
           protein.
          Length = 356

 Score =  246 bits (603), Expect = 2e-65
 Identities = 114/150 (76%), Positives = 131/150 (87%), Gaps = 1/150 (0%)

Query: 6   KNFPELKNDRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPELACEV 65
           K FP LKND LLRAA G+ VD+VPVWVMRQAGRYLPEFQE+R  HDFFTVCRTPELACEV
Sbjct: 5   KPFPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHDFFTVCRTPELACEV 64

Query: 66  TLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAV 125
           T+QPLRR++ LDASIIFSDILVIPQALG+TVEMH GVGPV P+P+  P ++  L P+GA+
Sbjct: 65  TMQPLRRFD-LDASIIFSDILVIPQALGLTVEMHAGVGPVLPQPIVVPEDLKRLTPDGAL 123

Query: 126 SRLDYVGKAITLTRHKIDGKVPLIGFTGAP 155
           SRL YVG AIT+ RHK++G+VPLIGFTGAP
Sbjct: 124 SRLSYVGDAITMMRHKLEGRVPLIGFTGAP 153



 Score =  235 bits (574), Expect = 7e-62
 Identities = 116/205 (56%), Positives = 148/205 (72%), Gaps = 8/205 (3%)

Query: 113 PSEIDGLQPEGAVSRLDYVGKAITLTRHKIDGKV-------PLIGFTGAPVESGAQLLQV 165
           P  + G   EG  S+     KA  L  H  D K+        ++ +    V++GAQ+LQV
Sbjct: 153 PWTLMGYMIEGGGSKTMSKAKA-WLNEHPEDSKLFLNLLTDAIVDYLEMQVKAGAQMLQV 211

Query: 166 FESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQAQLG 225
           FESSA+HLS+EQF ++ +PYLK IR  +  +LT+K++  VPMT+FAKGAGHSL  Q++LG
Sbjct: 212 FESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTKKAIPVVPMTLFAKGAGHSLKEQSELG 271

Query: 226 YETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKKFGKHRYIAN 285
           Y+ IGLDWTVDP EAR +VG NITLQGNLDPQD+Y+ P+E++ LTTEMV KFGK RYIAN
Sbjct: 272 YDVIGLDWTVDPLEARNLVGPNITLQGNLDPQDMYRDPDELRNLTTEMVHKFGKSRYIAN 331

Query: 286 LGHGITPQTPLESMTVFTETVHEAI 310
           LGHGITPQTP+ SM V  E VH+A+
Sbjct: 332 LGHGITPQTPITSMEVLVEAVHKAL 356


>AE014298-843|AAF46122.1| 1624|Drosophila melanogaster CG4320-PA
           protein.
          Length = 1624

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 234 TVDPTEARKIVGENITLQ-GNLDPQDLYK-----TPEEIKTLTTEMVKKFGKHRYIANL- 286
           +V P +A +++G N+ +Q     P+  YK     T +++K L T + +     R + +  
Sbjct: 251 SVSPPKAMELIGSNLQMQYERWQPRARYKKCNDPTVDDVKKLCTSLRRNAKGERILFHYN 310

Query: 287 GHGITPQTPLESMTVFTETVHEAI 310
           GHG+   T    + VF +T  + I
Sbjct: 311 GHGVPKPTANGEIWVFNKTFTQYI 334


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,622
Number of Sequences: 52641
Number of extensions: 671518
Number of successful extensions: 1574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 5
length of query: 310
length of database: 24,830,863
effective HSP length: 85
effective length of query: 225
effective length of database: 20,356,378
effective search space: 4580185050
effective search space used: 4580185050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)