Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000937-TA|BGIBMGA000937-PA|IPR000257|Uroporphyrinogen
decarboxylase (URO-D), IPR006361|Uroporphyrinogen decarboxylase HemE
(310 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 30 1.8
AF100660-3|AAC68972.1| 179|Caenorhabditis elegans Hypothetical ... 29 5.6
AF100660-2|AAC68971.1| 393|Caenorhabditis elegans Hypothetical ... 29 5.6
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 28 7.4
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 28 7.4
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 28 9.7
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 28 9.7
U28741-3|AAA68327.2| 410|Caenorhabditis elegans Hypothetical pr... 28 9.7
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend... 28 9.7
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo... 28 9.7
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor... 28 9.7
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 28 9.7
>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
constitutive dauerformation protein 2 protein.
Length = 1446
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 72 RYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEID 117
R + +D IF DI P ++GM +HP V F TP ++
Sbjct: 1256 RPKFVDVVEIFQDIQDDPASVGMPFPIHPAVRATFAHSQSTPVSVE 1301
>AF100660-3|AAC68972.1| 179|Caenorhabditis elegans Hypothetical
protein H35B03.2b protein.
Length = 179
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 209 IFAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVG---ENITLQ 251
IF+ GA LD+++ + + L W V EARK++ +N+ LQ
Sbjct: 44 IFSSGAETMLDLRSPVDVMNMSLLWGVANNEARKMISGFPKNLLLQ 89
>AF100660-2|AAC68971.1| 393|Caenorhabditis elegans Hypothetical
protein H35B03.2a protein.
Length = 393
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 209 IFAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVG---ENITLQ 251
IF+ GA LD+++ + + L W V EARK++ +N+ LQ
Sbjct: 258 IFSSGAETMLDLRSPVDVMNMSLLWGVANNEARKMISGFPKNLLLQ 303
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/74 (29%), Positives = 31/74 (41%)
Query: 14 DRLLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPELACEVTLQPLRRY 73
D L+R D +PV +RQ + VK + PE E L+PL +
Sbjct: 391 DGLMRKMTSPHYDLLPVPEVRQCLSLYHGLISIAVKTGDLNLLLEPERIYEYVLEPLIQT 450
Query: 74 EHLDASIIFSDILV 87
L A+ + SDI V
Sbjct: 451 VQLSATRLKSDIEV 464
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 81 IFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEID 117
++ + + P L + V+ P GP P P Q P++ID
Sbjct: 171 VYENNPIAPSELNVQVKRAPPQGPPPPPPPQAPADID 207
>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
protein F52B5.1 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 132 GKAITLTRHKIDGKVPLIGFTGAPVESGAQL-LQVFESSADHLSREQFTEFSIPYLKDIR 190
GK ++ K +G V GAP S QL L ES +S E+ ++ ++ +LK +
Sbjct: 178 GKNLSKIEEKPEGPVTS-QTAGAPSGSSNQLTLPTVESVPKDISSEESSKGNLHFLKKLP 236
Query: 191 SGVRA 195
+GV A
Sbjct: 237 AGVEA 241
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 263 PEEIKTLTTEMVKKFGKHRYIANLGHGITPQTPL-ESM-TVFTETVH 307
P++++T E+ G HR I H P+T L +S+ T F E +H
Sbjct: 676 PDKLQTTLLEISAALGAHRQIYVADHTFAPRTYLAQSLETKFVELLH 722
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 263 PEEIKTLTTEMVKKFGKHRYIANLGHGITPQTPL-ESM-TVFTETVH 307
P++++T E+ G HR I H P+T L +S+ T F E +H
Sbjct: 676 PDKLQTTLLEISAALGAHRQIYVADHTFAPRTYLAQSLETKFVELLH 722
>U28741-3|AAA68327.2| 410|Caenorhabditis elegans Hypothetical
protein F35D2.1 protein.
Length = 410
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 2 EYSNKNFPELKNDRLLRAALGKSVDK-VPVWVMRQAGRYLPEFQEVRVKHDFFTVCRTPE 60
+Y P LKN L+ +S+ + V R G P Q++R+ C TP
Sbjct: 268 DYQKNRDPVLKN--LIPRRWPRSIQEPTEAPVHRHMGAVYPPSQQIRMGRPICFRCLTPI 325
Query: 61 LACEVTLQPLRRYE 74
L + LQ +YE
Sbjct: 326 LLSQNVLQLAHQYE 339
>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
chloride bicarbonateanion exchanger alternative variant
a protein.
Length = 1161
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 132 GKAITLTRHKIDGKVPLIGFTGAPVESGAQL-LQVFESSADHLSREQFTEFSIPYLKDIR 190
GK ++ K +G V GAP S QL L ES +S E+ ++ ++ +LK +
Sbjct: 220 GKNLSKIEEKPEGPVTS-QTAGAPSGSSNQLTLPTVESVPKDISSEESSKGNLHFLKKLP 278
Query: 191 SGVRA 195
+GV A
Sbjct: 279 AGVEA 283
>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
transporter ABTS-1 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 132 GKAITLTRHKIDGKVPLIGFTGAPVESGAQL-LQVFESSADHLSREQFTEFSIPYLKDIR 190
GK ++ K +G V GAP S QL L ES +S E+ ++ ++ +LK +
Sbjct: 178 GKNLSKIEEKPEGPVTS-QTAGAPSGSSNQLTLPTVESVPKDISSEESSKGNLHFLKKLP 236
Query: 191 SGVRA 195
+GV A
Sbjct: 237 AGVEA 241
>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
protein.
Length = 1119
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 132 GKAITLTRHKIDGKVPLIGFTGAPVESGAQL-LQVFESSADHLSREQFTEFSIPYLKDIR 190
GK ++ K +G V GAP S QL L ES +S E+ ++ ++ +LK +
Sbjct: 178 GKNLSKIEEKPEGPVTS-QTAGAPSGSSNQLTLPTVESVPKDISSEESSKGNLHFLKKLP 236
Query: 191 SGVRA 195
+GV A
Sbjct: 237 AGVEA 241
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 263 PEEIKTLTTEMVKKFGKHRYIANLGHGITPQTPL-ESM-TVFTETVH 307
P++++T E+ G HR I H P+T L +S+ T F E +H
Sbjct: 676 PDKLQTTLLEISAALGAHRQIYVADHTFAPRTYLAQSLETKFVELLH 722
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,763,573
Number of Sequences: 27539
Number of extensions: 329138
Number of successful extensions: 612
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 13
length of query: 310
length of database: 12,573,161
effective HSP length: 81
effective length of query: 229
effective length of database: 10,342,502
effective search space: 2368432958
effective search space used: 2368432958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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