Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000937-TA|BGIBMGA000937-PA|IPR000257|Uroporphyrinogen
decarboxylase (URO-D), IPR006361|Uroporphyrinogen decarboxylase HemE
(310 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putativ... 120 1e-27
At3g14930.3 68416.m01889 uroporphyrinogen decarboxylase, putativ... 95 5e-20
At3g14930.2 68416.m01888 uroporphyrinogen decarboxylase, putativ... 95 5e-20
At3g14930.1 68416.m01887 uroporphyrinogen decarboxylase, putativ... 95 5e-20
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 30 1.7
At4g31805.1 68417.m04519 WRKY family transcription factor identi... 30 2.3
At1g66420.1 68414.m07544 hypothetical protein contains Pfam pro... 29 4.0
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA... 28 6.9
At2g01810.1 68415.m00111 PHD finger family protein contains Pfam... 28 6.9
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic... 28 9.2
>At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putative /
UPD, putative similar to uroporphyrinogen decarboxylase
(chloroplast) from Nicotiana tabacum [SP|Q42967],
Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
contains Pfam domain uroporphyrinogen decarboxylase
(URO-D) PF01208
Length = 394
Score = 120 bits (289), Expect = 1e-27
Identities = 66/161 (40%), Positives = 95/161 (59%), Gaps = 5/161 (3%)
Query: 148 LIGFTGAPVESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPM 207
+I + +SGAQ +Q+F+S A LS F EFS+PYLK I V K T +L P+
Sbjct: 236 MITYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVEAV--KQTHPNL---PL 290
Query: 208 TIFAKGAGHSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIK 267
++A G+G L+ A+ G + + LDWTVD E R +G +I +QGN+DP L+ + E I
Sbjct: 291 ILYASGSGGLLERLARTGVDVVSLDWTVDMAEGRDRLGRDIAVQGNVDPGVLFGSKEFIT 350
Query: 268 TLTTEMVKKFGKHRYIANLGHGITPQTPLESMTVFTETVHE 308
+ + VKK G+ ++I NLGHGI TP E++ F E E
Sbjct: 351 SRIHDTVKKAGRDKHILNLGHGIKVGTPEENVAHFFEVAQE 391
Score = 90.6 bits (215), Expect = 1e-18
Identities = 47/150 (31%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 16 LLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTV-CRTPELACEVTLQPLRRYE 74
LLRA G+ VD+ PVW+MRQAGRY+ +Q + K+ F +L E++LQP + ++
Sbjct: 56 LLRAVKGEVVDRPPVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWKVFK 115
Query: 75 HLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVSRLDYVGKA 134
D I+FSDIL + + ++ G GP+ P Q+ +++ ++ + YVG+A
Sbjct: 116 P-DGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESVPYVGEA 174
Query: 135 ITLTRHKIDGKVPLIGFTGAPVESGAQLLQ 164
+ R++++ + ++GF GAP + +++
Sbjct: 175 LRRLRNEVNNEAAVLGFVGAPFTLSSYVIE 204
>At3g14930.3 68416.m01889 uroporphyrinogen decarboxylase, putative /
UPD, putative similar to uroporphyrinogen decarboxylase
(chloroplast) from Nicotiana tabacum [SP|Q42967],
Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
contains Pfam domain uroporphyrinogen decarboxylase
(URO-D) PF01208
Length = 341
Score = 95.1 bits (226), Expect = 5e-20
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 156 VESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAG 215
VE GA +Q+F+S L+ E + +S PY+++I V+ K P+ + G G
Sbjct: 172 VEHGAHCIQIFDSWGGQLTPEMWERWSKPYIEEIIHAVK-----KRCPDTPIVFYINGNG 226
Query: 216 HSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVK 275
L+ G + IGLDWTVD + R+ +G +++QGN+DP L+ + +VK
Sbjct: 227 GLLERMKGTGADVIGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVK 286
Query: 276 KFGKHRYIANLGHGITPQTPLESMTVFTET 305
G +I NLGHG+ TP E++ F ET
Sbjct: 287 CAGPKGHILNLGHGVLVGTPEEAVAHFFET 316
Score = 75.8 bits (178), Expect = 3e-14
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 32 VMRQAGRYLPEFQEVRVKHDFFTV-CRTPELACEVTLQPLRRYEHLDASIIFSDILVIPQ 90
+MRQAGRY+ +Q++ KH F +L E++LQP + + D IIFSDIL
Sbjct: 1 MMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFRP-DGVIIFSDILTPLP 59
Query: 91 ALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVSRLDYVGKAITLTRHKIDGKVPLIG 150
A G+ ++ GPV P++T ++ L P +L +VG ++ + R ++ ++G
Sbjct: 60 AFGVPFDIEEVKGPVIQSPIRTEEDMKRLHPID-FEKLQFVGDSLKILRREVGEHAAVLG 118
Query: 151 FTGAP 155
F GAP
Sbjct: 119 FVGAP 123
>At3g14930.2 68416.m01888 uroporphyrinogen decarboxylase, putative /
UPD, putative similar to uroporphyrinogen decarboxylase
(chloroplast) from Nicotiana tabacum [SP|Q42967],
Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
contains Pfam domain uroporphyrinogen decarboxylase
(URO-D) PF01208
Length = 418
Score = 95.1 bits (226), Expect = 5e-20
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 156 VESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAG 215
VE GA +Q+F+S L+ E + +S PY+++I V+ K P+ + G G
Sbjct: 249 VEHGAHCIQIFDSWGGQLTPEMWERWSKPYIEEIIHAVK-----KRCPDTPIVFYINGNG 303
Query: 216 HSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVK 275
L+ G + IGLDWTVD + R+ +G +++QGN+DP L+ + +VK
Sbjct: 304 GLLERMKGTGADVIGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVK 363
Query: 276 KFGKHRYIANLGHGITPQTPLESMTVFTET 305
G +I NLGHG+ TP E++ F ET
Sbjct: 364 CAGPKGHILNLGHGVLVGTPEEAVAHFFET 393
Score = 92.7 bits (220), Expect = 3e-19
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 16 LLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTV-CRTPELACEVTLQPLRRYE 74
L++AA G+++ + P W+MRQAGRY+ +Q++ KH F +L E++LQP + +
Sbjct: 62 LVKAAKGQAISRPPAWMMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFR 121
Query: 75 HLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVSRLDYVGKA 134
D IIFSDIL A G+ ++ GPV P++T ++ L P +L +VG +
Sbjct: 122 P-DGVIIFSDILTPLPAFGVPFDIEEVKGPVIQSPIRTEEDMKRLHPID-FEKLQFVGDS 179
Query: 135 ITLTRHKIDGKVPLIGFTGAP 155
+ + R ++ ++GF GAP
Sbjct: 180 LKILRREVGEHAAVLGFVGAP 200
>At3g14930.1 68416.m01887 uroporphyrinogen decarboxylase, putative /
UPD, putative similar to uroporphyrinogen decarboxylase
(chloroplast) from Nicotiana tabacum [SP|Q42967],
Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
contains Pfam domain uroporphyrinogen decarboxylase
(URO-D) PF01208
Length = 418
Score = 95.1 bits (226), Expect = 5e-20
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 156 VESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAG 215
VE GA +Q+F+S L+ E + +S PY+++I V+ K P+ + G G
Sbjct: 249 VEHGAHCIQIFDSWGGQLTPEMWERWSKPYIEEIIHAVK-----KRCPDTPIVFYINGNG 303
Query: 216 HSLDIQAQLGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVK 275
L+ G + IGLDWTVD + R+ +G +++QGN+DP L+ + +VK
Sbjct: 304 GLLERMKGTGADVIGLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVK 363
Query: 276 KFGKHRYIANLGHGITPQTPLESMTVFTET 305
G +I NLGHG+ TP E++ F ET
Sbjct: 364 CAGPKGHILNLGHGVLVGTPEEAVAHFFET 393
Score = 92.7 bits (220), Expect = 3e-19
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%)
Query: 16 LLRAALGKSVDKVPVWVMRQAGRYLPEFQEVRVKHDFFTV-CRTPELACEVTLQPLRRYE 74
L++AA G+++ + P W+MRQAGRY+ +Q++ KH F +L E++LQP + +
Sbjct: 62 LVKAAKGQAISRPPAWMMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFR 121
Query: 75 HLDASIIFSDILVIPQALGMTVEMHPGVGPVFPKPLQTPSEIDGLQPEGAVSRLDYVGKA 134
D IIFSDIL A G+ ++ GPV P++T ++ L P +L +VG +
Sbjct: 122 P-DGVIIFSDILTPLPAFGVPFDIEEVKGPVIQSPIRTEEDMKRLHPID-FEKLQFVGDS 179
Query: 135 ITLTRHKIDGKVPLIGFTGAP 155
+ + R ++ ++GF GAP
Sbjct: 180 LKILRREVGEHAAVLGFVGAP 200
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 112 TPSEIDGLQPEGAVSRLDYVGKAITLTRHKIDGKVPLIGFTGAPVESG----AQLLQVFE 167
+P++ LQ E A+ ++D++ K + + +VP G+P+ SG A +E
Sbjct: 344 SPTKNYTLQAESALDQMDWIEKITGVIASLLSSQVPEQRLPGSPMGSGHHRSASESSSYE 403
Query: 168 SSA-DHLSREQF 178
SS DH + E+F
Sbjct: 404 SSEYDHPTTEEF 415
>At4g31805.1 68417.m04519 WRKY family transcription factor identical
to WRKY DNA-binding protein 18 (WRKY18) GI:13506730 from
[Arabidopsis thaliana]
Length = 344
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 150 GFTGAPVESGAQLLQVFESSADHLSREQFTEFSIPYLKDIRSG 192
GF +P E +F+ S+ + +E++TEF + +D R G
Sbjct: 150 GFQFSPQEFSNLASSIFQESSSSVLQEEYTEFEVSEPEDYRRG 192
>At1g66420.1 68414.m07544 hypothetical protein contains Pfam
profile: PF04504 protein of unknown function, DUF573
Length = 282
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 224 LGYETIGLDWTVDPTEARKIVGENITLQGNLDPQDLYKTPEEIKTLTTEMVKK 276
LG +++ W V P E +K + E + L D + K E +K +E VK+
Sbjct: 218 LGVDSVKRKWNVVPMEFKKKIEERLELL-EADESECKKMEEMLKVKNSECVKQ 269
>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
identical to half-molecule ABC transporter ATM3
GI:9964121 from [Arabidopsis thaliana]; almost identical
to mitochondrial half-ABC transporter STA1 GI:9187883
from [Arabidopsis thaliana]; identical to cDNA
mitochondrial half-ABC transporter (STA1 gene)GI:9187882
Length = 728
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 162 LLQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEKSLEQVPMTIFAKGAGHSLDIQ 221
LL VF + A L ++R+ V +K+ +++ V +F+ H LD++
Sbjct: 191 LLTVFATPAAVLIGYGIARTGSSAFNELRTAVFSKVALRTIRSVSRKVFSHL--HDLDLR 248
Query: 222 AQLGYETIGLDWTVD 236
L ET GL+ +D
Sbjct: 249 YHLSRETGGLNRIID 263
>At2g01810.1 68415.m00111 PHD finger family protein contains Pfam
profile: PF00628: PHD-finger
Length = 697
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 163 LQVFESSADHLSREQFTEFSIPYLKDIRSGVRAKLTEK-SLEQVPMTIF-AKGAGHSLDI 220
++ +S+A+ + R+ + + +IR+ KL + SL+ T F KG G LDI
Sbjct: 564 IRELKSAAEKVLRDTYCITETFEVLEIRNRYLEKLDDNVSLKSQGNTEFMVKGFG--LDI 621
Query: 221 QAQLGYETIGLDWTVD 236
+L YE DWTVD
Sbjct: 622 GTELRYEGGFDDWTVD 637
>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
to mRNA cap binding protein [Arabidopsis thaliana]
GI:15192738; contains Pfam profile PF02854: MIF4G
domain; identical to cDNA nuclear cap-binding protein
CBP80 GI:8515770
Length = 848
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 56 CRTPELACEVTLQPLRRYEHLDASIIFSDILVIPQ 90
CR + L RYE+L A +FS IL++PQ
Sbjct: 327 CRKECASYMANLPVTFRYEYLMAETLFSQILLLPQ 361
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,411,377
Number of Sequences: 28952
Number of extensions: 315104
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 14
length of query: 310
length of database: 12,070,560
effective HSP length: 81
effective length of query: 229
effective length of database: 9,725,448
effective search space: 2227127592
effective search space used: 2227127592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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