Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...   219   3e-58
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    29   0.45 
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    28   1.0  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    28   1.4  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   4.2  

>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score =  219 bits (535), Expect = 3e-58
 Identities = 119/238 (50%), Positives = 163/238 (68%), Gaps = 6/238 (2%)

Query: 3   LEQAKQVAAYQAVDQ-FVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAK 61
           +E AK++A + AVD+ +  N  + G+GSGSTVVY V+RL  +   +   V  IPT FQ+K
Sbjct: 13  IELAKRLACHMAVDENYPENPKVIGIGSGSTVVYVVERLLTKPGVDS--VVFIPTGFQSK 70

Query: 62  QLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIA 121
           QLI+ +GL LG+ +  PN+DV+ DGADEVD N+  IKGGG CL QEK+IA  +K+L+++A
Sbjct: 71  QLIVNNGLRLGDPDCYPNVDVSFDGADEVDDNLQCIKGGGACLFQEKLIAFLAKRLVIVA 130

Query: 122 DYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLR-SAVAKAGPVVTDNGN 180
           D  K+S  LG+ +KKGVPIEV+PMAY  I  +++ L   E KLR  A  KAGPVVTDNGN
Sbjct: 131 DSRKNSHVLGEYWKKGVPIEVMPMAYASILPQLVELGAIEPKLRMGAPGKAGPVVTDNGN 190

Query: 181 FILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNV-VERSVIEK 237
           FI+D  F     + +++   IKL+ GVVE GLF +M    YFG  +G+V V+++  EK
Sbjct: 191 FIIDAHFGLIK-NPKELFAKIKLLVGVVEVGLFCDMISAVYFGSKDGSVTVKKASGEK 247


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 78  PNIDVTIDGADEVDSNMTLIK-GGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKK 136
           P I   ++    V+   T+++ G G   L  +IIAS  K++I +  Y +    L  ++  
Sbjct: 22  PQITEWLNDEFSVNETSTILELGAGSGKLTPRIIASQPKEIIAVDTYVEMLDVLKKKF-P 80

Query: 137 GVPIEVIPMAYVPIKNKIISLYG-GE----IKLRSAVAKAGPVVTDNGNFILDWMFANQN 191
            V   V     +P++++ + L   G+         A+ +   V+  NG   L W   + +
Sbjct: 81  NVDCRVGSAMAIPLEDESVDLVACGQCFHWFANEEALKEIYRVLKPNGKLALIWNIRDNS 140

Query: 192 LDW-EKVNNTIKLIPG 206
           + W EK +  ++   G
Sbjct: 141 VPWVEKCSQLLEKCRG 156


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 77  NPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKK 136
           NP+++ T     EV S   L K GG    Q + +++ S   I+     K SVK+ D  K+
Sbjct: 170 NPDVNSTTSSPSEVGS---LDKAGGPLNQQNENLSAESDNTILQNGTRKSSVKMSDLGKR 226

Query: 137 GVPIEVIPMAYVPIKNKIISLY 158
              + V+     PI+  I S Y
Sbjct: 227 IASLPVVKRP--PIQFSISSDY 246


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 44  VESEKLKVTCIPTSFQAKQLIIKHGLNL 71
           V+ + LKV C  T F  + ++++ GLNL
Sbjct: 211 VQPKHLKVACATTDFSMQNVLLQIGLNL 238


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 79  NIDVTIDGADEVDSNMTLIKGGGGCLLQ 106
           N+D T+ G  EV + M LI+    C+L+
Sbjct: 377 NLDYTLRGRPEVFAGMQLIEWANACVLK 404


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,232
Number of Sequences: 5004
Number of extensions: 43689
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 2,362,478
effective HSP length: 71
effective length of query: 166
effective length of database: 2,007,194
effective search space: 333194204
effective search space used: 333194204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)