Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
(237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187 132 2e-31
04_03_0280 + 13854758-13855585 122 3e-28
03_06_0182 - 32182202-32182272,32182351-32182468,32182734-321828... 55 4e-08
01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780... 31 0.82
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 31 1.1
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718... 30 1.4
>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
Length = 337
Score = 132 bits (319), Expect = 2e-31
Identities = 84/239 (35%), Positives = 132/239 (55%), Gaps = 9/239 (3%)
Query: 1 MSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQ 59
++ + K++AA +AV+Q V + + G+G+GST +AV + + S KL + +PTS +
Sbjct: 47 LTQDDLKRLAAVRAVEQ-VESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKR 105
Query: 60 AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 119
+ G+ L L+ +P ID+ IDGADEVD ++ L+KG GG LL+EK++ + S K IV
Sbjct: 106 TFEQAQSLGIPLSTLDDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIV 165
Query: 120 IADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLY---GGEIKLRSAVAKAG-PVV 175
+ D TK LG +P+EV+ + + ++ L+ G E KLR + + G P V
Sbjct: 166 VVDETKLVTGLGGS-GLAMPVEVVQFCWKYNQVRLQDLFNDEGCEAKLR--LDEGGKPYV 222
Query: 176 TDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNVVERSV 234
TDN N+I+D F D I + GVVE GLF++M +G V+ +V
Sbjct: 223 TDNSNYIVDLYFKTPIKDALAAGKEISALEGVVEHGLFLDMATSVIIAGTDGVSVKTNV 281
>04_03_0280 + 13854758-13855585
Length = 275
Score = 122 bits (294), Expect = 3e-28
Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 14/237 (5%)
Query: 4 EQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQ 62
E+ K+VAA++AV+ V G+G+GST +A+ RL + + S +L V +PTS + +
Sbjct: 35 EELKRVAAHRAVEM-VEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEA 93
Query: 63 LIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIAD 122
+ G+ + L ID++IDGADEVD + L+KG GG LL+EK+I + +VI D
Sbjct: 94 HAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVIVD 153
Query: 123 YTKDSVKLGDRYKKGVPIEVIPMA---YVPIKNKII-SLYGGEIKLRSAVAKAGP----- 173
+K +LG VP+EV+P + + K+ L G +LR+ +K G
Sbjct: 154 ESKLVPRLG--CTGAVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEEM 211
Query: 174 VVTDNGNFILDWMFANQ-NLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNV 229
VTDNGN+I++ F + D ++++ + I GVVE G+F+ M + +G V
Sbjct: 212 FVTDNGNYIVEMFFEDGIRGDLNEISDRLLRITGVVEHGMFLGMATSVVVAKKDGTV 268
>03_06_0182 -
32182202-32182272,32182351-32182468,32182734-32182829,
32182940-32183047,32183135-32183204,32183346-32183473,
32183570-32183755
Length = 258
Score = 55.2 bits (127), Expect = 4e-08
Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 10 AAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHG 68
AA VD+FV + + G+GSG A+Q L R+ L + IP+S + +K G
Sbjct: 58 AAKLTVDRFVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAG 117
Query: 69 LNLGELETNPNIDVTIDGADEVDSN-MTLIKG------GGGCLLQEKIIASCSKKLIVIA 121
+ + E ID AD ++ + MT + G G + EK I + KL I
Sbjct: 118 IQVSSYEEGTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFII 177
Query: 122 DYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNF 181
+ ++Y KG+ +P+ K + I + P+VT G+
Sbjct: 178 GH--------EKYVKGIE------GSIPVLVKSV-WRRPSIGTAGPLGGDFPLVTKEGHH 222
Query: 182 ILDWMFANQNLDWEKVNNTIKLIPGVVETGL 212
+LD +F D KV +++ I GVV+ G+
Sbjct: 223 VLDVIFTTPIPDLGKVAESLEKIAGVVDHGI 253
>01_01_0988 -
7806113-7806193,7806275-7806499,7806589-7806709,
7807065-7807256,7807884-7807947,7808135-7808261,
7808338-7808411,7808494-7808598,7808763-7808865,
7808966-7809028,7809113-7809296,7809788-7809858
Length = 469
Score = 31.1 bits (67), Expect = 0.82
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 108 KIIASCSKKLIVIADYTKDSV-KLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRS 166
K++ SC+KK V A DSV L + K V I P +Y +K+ I++ YG +
Sbjct: 175 KLLYSCNKKFRVAASDFWDSVLSLNEADKLSVDIGHFP-SYSVLKSAILN-YGYIFDNCT 232
Query: 167 AVAKAGPVVTDNG--NFILDWM 186
V+ + V+ D+G I++W+
Sbjct: 233 EVSTSESVIADDGPPQNIIEWL 254
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 9 VAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQ---AKQLII 65
+A +++ + + NC+ G G STV VQ V ++LK + + + A+++ +
Sbjct: 463 LATIKSITENFSENCLIGEGGFSTVYKGVQSDGRMVAVKRLKQSALTNKGKKDFAREVAV 522
Query: 66 KHGLNLGEL 74
GL+ G L
Sbjct: 523 MAGLHHGSL 531
>02_05_0831 -
32071280-32071403,32071528-32071706,32071786-32071893,
32071987-32072109,32072480-32072608,32072998-32073281,
32073783-32074094,32074208-32074340
Length = 463
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 47 EKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQ 106
EK+ + +P++ A + I + + N IDV + DE + C L
Sbjct: 266 EKVAPSSLPSACAALKAIAVNDEICRSISENGGIDVLLRCIDEASEQKNKVIAKSCCSLL 325
Query: 107 EKIIASCSKKLIVIADYTKDS-VKLGDRYKKGVPI--EVIPMAYV 148
K+ S + K +I D +KL R+ + PI EV+ M +
Sbjct: 326 SKLAGSDANKTTIIERGGFDKFLKLTSRFSEDPPIIQEVMSMVTI 370
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,201
Number of Sequences: 37544
Number of extensions: 277118
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 7
length of query: 237
length of database: 14,793,348
effective HSP length: 80
effective length of query: 157
effective length of database: 11,789,828
effective search space: 1851002996
effective search space used: 1851002996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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