Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
         (237 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_24199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query: 59  QAKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGG 101
           QA+QLI ++ L L +LE NP +DV IDGADEVD+N+TLIKGGG
Sbjct: 37  QAQQLITENKLVLSDLERNPELDVAIDGADEVDANLTLIKGGG 79


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 42  ERVESEKLKVTCIPTSFQAKQLIIKHGLN-LGELETNPNIDVTIDGADEVDSNMTLIKGG 100
           E+VES     T + T+ + ++   K  ++   + E +P ++V I    EV S++   +  
Sbjct: 242 EKVESSTDFETHVSTTPENQESAKKLKMSDTPQKEISPKVEVIIPETPEVHSSLNANQNT 301

Query: 101 GG---CLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIP 144
                C     I+ S  K L VI + T+ S+K+ +  +    +EV+P
Sbjct: 302 PSPRRCKTSMSIVISPVKPLSVIQETTESSIKVDEHSQVVEVVEVLP 348


>SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 175 VTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCC 218
           + D G   LDWM  N N    KV+  + LIP + +T + ++  C
Sbjct: 98  MADKGIIALDWMTVNDN-SLLKVSPVMLLIPALTQTAVDLSSAC 140


>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 32  TVVYAVQRLAE--RVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGADE 89
           T+  AV+   E  R+E     VT   T  Q ++L   +GL     E    +DV+      
Sbjct: 225 TLSIAVKVFCEKLRIEKNSFLVTKQNTKQQRRRLHRHYGLKTRPRENQDGLDVSEQELKR 284

Query: 90  VDSNMTLIKGGGGCLLQEKI----IASCSKKLIVIADYT 124
             S + L+  GG    +E+I    +  C+++L  + ++T
Sbjct: 285 SSSEVVLLGAGGFFWSKERITDEDLVKCTERLHEVDEHT 323


>SB_24199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 217 CCKAYFGQPEGNVVERSVIEK 237
           CC+ Y G P+G  ++R  I+K
Sbjct: 15  CCQGYQGPPKGRAIQRGGIQK 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,510,053
Number of Sequences: 59808
Number of extensions: 305012
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 16,821,457
effective HSP length: 80
effective length of query: 157
effective length of database: 12,036,817
effective search space: 1889780269
effective search space used: 1889780269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)