Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
(237 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01290.1 68415.m00043 expressed protein 153 1e-37
At1g71100.1 68414.m08205 ribose 5-phosphate isomerase-related si... 148 4e-36
At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related si... 126 1e-29
At5g44520.1 68418.m05454 ribose 5-phosphate isomerase-related lo... 77 1e-14
At5g36830.1 68418.m04413 hypothetical protein several hypothetic... 31 0.90
At5g36734.1 68418.m04397 hypothetical protein 31 0.90
At5g20790.1 68418.m02470 expressed protein predicted protein, Ar... 31 0.90
At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70... 29 3.6
At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative v... 29 3.6
At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein co... 29 3.6
At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative v... 28 4.8
At2g22480.1 68415.m02667 phosphofructokinase family protein simi... 28 4.8
At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative v... 28 6.4
At5g66220.1 68418.m08342 chalcone-flavanone isomerase, putative ... 27 8.4
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi... 27 8.4
>At2g01290.1 68415.m00043 expressed protein
Length = 265
Score = 153 bits (370), Expect = 1e-37
Identities = 87/220 (39%), Positives = 135/220 (61%), Gaps = 7/220 (3%)
Query: 1 MSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQ 59
++ ++ K++AAY+AV+ FV + + G+G+GST +AV R+ E + KL+ + IPTS +
Sbjct: 31 LTQDELKRIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKK 89
Query: 60 AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 119
++ + G+ L +L+ +P ID++IDGADEVD + L+KG GG LL+EK+I SKK +V
Sbjct: 90 TQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVV 149
Query: 120 IADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISL---YGGEIKLRSAVAKAGPVVT 176
I D +K +G K +P+E++P + K+ SL YG E LR K VT
Sbjct: 150 IVDDSKMVKHIGGS-KLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLG-EKGKAFVT 207
Query: 177 DNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNM 216
DNGN+I+D D V++ I +PGVVE G+F++M
Sbjct: 208 DNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDM 247
>At1g71100.1 68414.m08205 ribose 5-phosphate isomerase-related
similar to ribose-5-phosphate isomerase GI:18654317 from
[Spinacia oleracea]
Length = 267
Score = 148 bits (358), Expect = 4e-36
Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 10/224 (4%)
Query: 1 MSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQ 59
++ E+ K++AAY+AV+ FV + + G+G+GST +AV R++E + KLK + IPTS
Sbjct: 27 LTQEELKKIAAYKAVE-FVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGIPTSTT 85
Query: 60 AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 119
+ + G+ L +L+++P +D++IDGADEVD + L+KG GG LL+EK+I SKK +V
Sbjct: 86 THEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGASKKFVV 145
Query: 120 IADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLY---GGEIKLRSAVA----KAG 172
I D +K VK VP+EV+P + K+ L+ G KLR + +A
Sbjct: 146 IVDESK-LVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNGEEAA 204
Query: 173 PVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNM 216
P VTDN N+++D D E + I PGVVE G+F+ M
Sbjct: 205 PAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGM 248
>At3g04790.1 68416.m00516 ribose 5-phosphate isomerase-related
similar to ribose-5-phosphate isomerase GI:18654317 from
[Spinacia oleracea]
Length = 276
Score = 126 bits (305), Expect = 1e-29
Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 7/231 (3%)
Query: 1 MSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKL-KVTCIPTSFQ 59
+S + K++AA +AV+ + + G+G+GST +AV ++ + + S +L + IPTS +
Sbjct: 43 LSQDDLKKLAAEKAVEA-IKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKR 101
Query: 60 AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 119
++ G+ L L+T+P ID+ IDGADEVD N+ L+KG GG LL+EK++ + + K IV
Sbjct: 102 TEEQARSLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIV 161
Query: 120 IADYTKDSVKLGDRYKKGVPIEVIPMAY---VPIKNKIISLYGGEIKLRSAVAKAGPVVT 176
+AD TK LG +P+EV+ + + + +G E KLR P VT
Sbjct: 162 VADDTKLVTGLGGS-GLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLR-VDGDGKPYVT 219
Query: 177 DNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEG 227
DN N+I+D F D I GVVE GLF+ M G
Sbjct: 220 DNSNYIIDLYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNG 270
>At5g44520.1 68418.m05454 ribose 5-phosphate isomerase-related low
similarity to SP|P47968 Ribose 5-phosphate isomerase (EC
5.3.1.6) (Phosphoriboisomerase) {Mus musculus}
Length = 296
Score = 77.0 bits (181), Expect = 1e-14
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 14/222 (6%)
Query: 10 AAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKL-KVTCIPTSFQAKQLIIKHG 68
AA+ VD +V + I G+GSG +A++ L +++ S L V +P S ++ K+G
Sbjct: 43 AAHHTVDNYVKSGMIIGLGSGEASDFAIRYLGQQLGSGSLHNVVGVPMSARSASEAAKYG 102
Query: 69 LNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSV 128
+ L ID AD V+ N + G QE K ++ +AD +
Sbjct: 103 IPLEYYRDGVQIDFAFHDADAVEENTLIAVIGRRRSSQEDDYILKQKSIVKVADEAVFMI 162
Query: 129 KLGDRYKKG----VPIEVIPMAYVPIKNKIISLYGGEIKL--RSAVAKAGP------VVT 176
K ++YK G +P+ V + ++ I +I LY G+ ++ R++V GP +VT
Sbjct: 163 K-EEQYKAGLEGSIPVLVQSLNWLAIAEEIDDLYLGDAEVWRRASVENEGPLGGDFPIVT 221
Query: 177 DNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCC 218
+G+ ILD +F + ++ I GVV+ GL + C
Sbjct: 222 SDGHNILDVIFTTPIRSLADLATSLDKIDGVVDHGLIIKTRC 263
>At5g36830.1 68418.m04413 hypothetical protein several hypothetical
proteins - Arabidopsis thaliana
Length = 177
Score = 30.7 bits (66), Expect = 0.90
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 118 IVIADYTKDSVKLGDRYKKGVP-IEVIPMAYVPIKNKIISLYGGEIKLRSAVAKAGPVVT 176
+++ADY DS+K+ R VP + P Y+ K+ ++ + + A+ G + T
Sbjct: 40 LILADYETDSLKMSGRRSPPVPDFDFTPFDYILDKSAYKNVL---VDVIGALVDVGALTT 96
Query: 177 DNGNFILDWMFANQNLDWEKVNNTIKLIPGVVET 210
D + L F N+ L+ E N + + G ++
Sbjct: 97 D--YYGLKLSFNNEVLECEARNQQAEYLDGYFQS 128
>At5g36734.1 68418.m04397 hypothetical protein
Length = 177
Score = 30.7 bits (66), Expect = 0.90
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 118 IVIADYTKDSVKLGDRYKKGVP-IEVIPMAYVPIKNKIISLYGGEIKLRSAVAKAGPVVT 176
+++ADY DS+K+ R VP + P Y+ K+ ++ + + A+ G + T
Sbjct: 40 LILADYETDSLKMSGRRSPPVPDFDFTPFDYILDKSAYKNVL---VDVIGALVDVGALTT 96
Query: 177 DNGNFILDWMFANQNLDWEKVNNTIKLIPGVVET 210
D + L F N+ L+ E N + + G ++
Sbjct: 97 D--YYGLKLSFNNEVLECEARNQQAEYLDGYFQS 128
>At5g20790.1 68418.m02470 expressed protein predicted protein,
Arabidopsis thaliana
Length = 193
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 56 TSFQAKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGG 102
T + + LI G+ G+L +DV +DG V+ ++T + GGG
Sbjct: 93 TVTKTEPLICDDGVTKGKLTMCYEVDVDVDGGRCVNGDLTAVSYGGG 139
>At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein 70
[Arabidopsis thaliana] GI:6746592; similar to heat shock
70 protein - Spinacia oleracea,PID:g2654208
Length = 718
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 30 GSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVT 83
GST + AVQ L +V ++ VT P A ++ G+ G++ +DVT
Sbjct: 413 GSTRIPAVQELVRKVTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVT 466
>At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 100 GGGCLLQE--KIIASCS-KKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIIS 156
GG C ++ ++ C L +A+Y K +K+ D K V+ + + NK I+
Sbjct: 269 GGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIA 328
Query: 157 LYGGEIKLRSAVAKAGPVV 175
+ G K + + P +
Sbjct: 329 VLGFAFKKDTGDTRETPAI 347
>At1g07725.1 68414.m00833 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 566
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 81 DVTIDGADEVDSNMTLIK--GGGG---CLLQEKIIASCSKKLIVIADYTKDSVKLGDRYK 135
D + DG +S+ L K GGGG ++ K+IA+C ++ + Y KD VK+ +++
Sbjct: 149 DSSSDGELYSESSSELGKDIGGGGNSDAIVDLKMIANC----MISSGYEKDCVKIYKKFR 204
Query: 136 KGVPIEVI 143
K + ++ +
Sbjct: 205 KKIIVDTL 212
>At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 100 GGGCLLQE--KIIASCS-KKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIIS 156
GG C ++ ++ C L +A+Y K +K+ D K ++ + + NK ++
Sbjct: 269 GGSCFQKDILNLVYICQCNGLPEVAEYWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVA 328
Query: 157 LYGGEIKLRSAVAKAGPVV 175
+ G K + + P +
Sbjct: 329 ILGFAFKKDTGDTRETPAI 347
>At2g22480.1 68415.m02667 phosphofructokinase family protein similar
to phosphofructokinase [Amycolatopsis methanolica]
GI:17432243; contains Pfam profile PF00365:
Phosphofructokinase
Length = 537
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 51 VTCIPTSFQAKQLI-IKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKI 109
+T +P S + Q I + G LG P++ +D +E NM + GG G
Sbjct: 228 LTEMPLSRKVVQNIHLSGGSLLGVSRGGPSVSEIVDSMEERGINMLFVLGGNGTHAGANA 287
Query: 110 IAS-CSKKLIVIA 121
I + C K+ I +A
Sbjct: 288 IHNECRKRKIKVA 300
>At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 100 GGGCLLQE--KIIASCS-KKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIIS 156
GG C ++ ++ C L +A+Y K +K+ D K ++ + + NK I+
Sbjct: 269 GGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKTRFVNRIVSSMFNTVSNKKIA 328
Query: 157 LYGGEIKLRSAVAKAGPVV 175
+ G K + + P +
Sbjct: 329 VLGFAFKKDTGDTRETPAI 347
>At5g66220.1 68418.m08342 chalcone-flavanone isomerase, putative /
chalcone isomerase, putative (CHI) similar to SP|P41088
Length = 223
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 68 GLNLGEL-ETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKD 126
G N EL E+ P + G E + +T+ K G EK++ +C + + YT+
Sbjct: 61 GKNAKELTESVPFFRQLVTGEFEKLARVTMKKRLTGIQYSEKVVENCEEIMKASGKYTRS 120
Query: 127 SVKLGDRY 134
K D++
Sbjct: 121 EAKAIDQF 128
>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 721
Score = 27.5 bits (58), Expect = 8.4
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Query: 13 QAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLG 72
+A FV + +G V ++ A +++ + +V + + + G +L
Sbjct: 449 EAYTSFVKSQMELALGRFENAVVTAEK-ASKIDPQNNEVEILYKNVRLITRARDRGNDLY 507
Query: 73 ELETNPNI-DVTIDGADEVDSNMTLIKGGGGCLLQ----EKIIASCSKKLIVIADYTKDS 127
ELE +G SN TL+ C + E I C+ L+++ YTK
Sbjct: 508 ELERYTEARSAYAEGLKYDPSNATLLCYRADCFFKVGMWESSIEDCNHALLILPSYTKPR 567
Query: 128 VKLGDRYKK 136
++ Y K
Sbjct: 568 LQRAALYTK 576
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,517,358
Number of Sequences: 28952
Number of extensions: 233158
Number of successful extensions: 470
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 15
length of query: 237
length of database: 12,070,560
effective HSP length: 79
effective length of query: 158
effective length of database: 9,783,352
effective search space: 1545769616
effective search space used: 1545769616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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