GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
         (237 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 181  FILDWMFANQNLDWE 195
            FI +W F   +LDWE
Sbjct: 2429 FIEEWNFDGLDLDWE 2443



 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 181  FILDWMFANQNLDWE 195
            F+  W F   +LDWE
Sbjct: 1506 FLEKWNFDGLDLDWE 1520


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 169 AKAGPVVTDNGNFILDWMFANQNLDWE 195
           AK    +    N +  W F   +LDWE
Sbjct: 120 AKRATFIKSALNLVQKWGFDGFDLDWE 146


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 145 MAYVPIKNKIISLYGGEIKLRSAVAKAGP 173
           +A + I N + S  G EI++   +  +GP
Sbjct: 180 LAAIRINNILFSAEGVEIRIPDVIKTSGP 208


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 181 FILDWMFANQNLDWE 195
           F+  W F   +LDWE
Sbjct: 128 FVKTWGFDGFDLDWE 142


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,834
Number of Sequences: 317
Number of extensions: 2097
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 114,650
effective HSP length: 55
effective length of query: 182
effective length of database: 97,215
effective search space: 17693130
effective search space used: 17693130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)