GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
         (237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187          132   2e-31
04_03_0280 + 13854758-13855585                                        122   3e-28
03_06_0182 - 32182202-32182272,32182351-32182468,32182734-321828...    55   4e-08
01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780...    31   0.82 
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081...    31   1.1  
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718...    30   1.4  

>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
          Length = 337

 Score =  132 bits (319), Expect = 2e-31
 Identities = 84/239 (35%), Positives = 132/239 (55%), Gaps = 9/239 (3%)

Query: 1   MSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQ 59
           ++ +  K++AA +AV+Q V +  + G+G+GST  +AV  +   + S KL  +  +PTS +
Sbjct: 47  LTQDDLKRLAAVRAVEQ-VESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKR 105

Query: 60  AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 119
             +     G+ L  L+ +P ID+ IDGADEVD ++ L+KG GG LL+EK++ + S K IV
Sbjct: 106 TFEQAQSLGIPLSTLDDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIV 165

Query: 120 IADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLY---GGEIKLRSAVAKAG-PVV 175
           + D TK    LG      +P+EV+   +   + ++  L+   G E KLR  + + G P V
Sbjct: 166 VVDETKLVTGLGGS-GLAMPVEVVQFCWKYNQVRLQDLFNDEGCEAKLR--LDEGGKPYV 222

Query: 176 TDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNVVERSV 234
           TDN N+I+D  F     D       I  + GVVE GLF++M         +G  V+ +V
Sbjct: 223 TDNSNYIVDLYFKTPIKDALAAGKEISALEGVVEHGLFLDMATSVIIAGTDGVSVKTNV 281


>04_03_0280 + 13854758-13855585
          Length = 275

 Score =  122 bits (294), Expect = 3e-28
 Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 14/237 (5%)

Query: 4   EQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQ 62
           E+ K+VAA++AV+  V      G+G+GST  +A+ RL + + S +L  V  +PTS + + 
Sbjct: 35  EELKRVAAHRAVEM-VEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEA 93

Query: 63  LIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIAD 122
              + G+ +  L     ID++IDGADEVD  + L+KG GG LL+EK+I     + +VI D
Sbjct: 94  HAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVIVD 153

Query: 123 YTKDSVKLGDRYKKGVPIEVIPMA---YVPIKNKII-SLYGGEIKLRSAVAKAGP----- 173
            +K   +LG      VP+EV+P      + +  K+   L G   +LR+  +K G      
Sbjct: 154 ESKLVPRLG--CTGAVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEEM 211

Query: 174 VVTDNGNFILDWMFANQ-NLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNV 229
            VTDNGN+I++  F +    D  ++++ +  I GVVE G+F+ M       + +G V
Sbjct: 212 FVTDNGNYIVEMFFEDGIRGDLNEISDRLLRITGVVEHGMFLGMATSVVVAKKDGTV 268


>03_06_0182 -
           32182202-32182272,32182351-32182468,32182734-32182829,
           32182940-32183047,32183135-32183204,32183346-32183473,
           32183570-32183755
          Length = 258

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 23/211 (10%)

Query: 10  AAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHG 68
           AA   VD+FV +  + G+GSG     A+Q L  R+    L  +  IP+S  +    +K G
Sbjct: 58  AAKLTVDRFVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAG 117

Query: 69  LNLGELETNPNIDVTIDGADEVDSN-MTLIKG------GGGCLLQEKIIASCSKKLIVIA 121
           + +   E    ID     AD ++ + MT + G      G    + EK I   + KL  I 
Sbjct: 118 IQVSSYEEGTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFII 177

Query: 122 DYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNF 181
            +        ++Y KG+         +P+  K +      I     +    P+VT  G+ 
Sbjct: 178 GH--------EKYVKGIE------GSIPVLVKSV-WRRPSIGTAGPLGGDFPLVTKEGHH 222

Query: 182 ILDWMFANQNLDWEKVNNTIKLIPGVVETGL 212
           +LD +F     D  KV  +++ I GVV+ G+
Sbjct: 223 VLDVIFTTPIPDLGKVAESLEKIAGVVDHGI 253


>01_01_0988 -
           7806113-7806193,7806275-7806499,7806589-7806709,
           7807065-7807256,7807884-7807947,7808135-7808261,
           7808338-7808411,7808494-7808598,7808763-7808865,
           7808966-7809028,7809113-7809296,7809788-7809858
          Length = 469

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 108 KIIASCSKKLIVIADYTKDSV-KLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRS 166
           K++ SC+KK  V A    DSV  L +  K  V I   P +Y  +K+ I++ YG      +
Sbjct: 175 KLLYSCNKKFRVAASDFWDSVLSLNEADKLSVDIGHFP-SYSVLKSAILN-YGYIFDNCT 232

Query: 167 AVAKAGPVVTDNG--NFILDWM 186
            V+ +  V+ D+G    I++W+
Sbjct: 233 EVSTSESVIADDGPPQNIIEWL 254


>04_04_1273 -
           32307273-32307569,32307659-32307791,32307874-32308105,
           32308220-32308436,32308594-32308718,32309416-32310757
          Length = 781

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 9   VAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQ---AKQLII 65
           +A  +++ +  + NC+ G G  STV   VQ     V  ++LK + +    +   A+++ +
Sbjct: 463 LATIKSITENFSENCLIGEGGFSTVYKGVQSDGRMVAVKRLKQSALTNKGKKDFAREVAV 522

Query: 66  KHGLNLGEL 74
             GL+ G L
Sbjct: 523 MAGLHHGSL 531


>02_05_0831 -
           32071280-32071403,32071528-32071706,32071786-32071893,
           32071987-32072109,32072480-32072608,32072998-32073281,
           32073783-32074094,32074208-32074340
          Length = 463

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 47  EKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQ 106
           EK+  + +P++  A + I  +      +  N  IDV +   DE       +     C L 
Sbjct: 266 EKVAPSSLPSACAALKAIAVNDEICRSISENGGIDVLLRCIDEASEQKNKVIAKSCCSLL 325

Query: 107 EKIIASCSKKLIVIADYTKDS-VKLGDRYKKGVPI--EVIPMAYV 148
            K+  S + K  +I     D  +KL  R+ +  PI  EV+ M  +
Sbjct: 326 SKLAGSDANKTTIIERGGFDKFLKLTSRFSEDPPIIQEVMSMVTI 370


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,201
Number of Sequences: 37544
Number of extensions: 277118
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 7
length of query: 237
length of database: 14,793,348
effective HSP length: 80
effective length of query: 157
effective length of database: 11,789,828
effective search space: 1851002996
effective search space used: 1851002996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)