Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000936-TA|BGIBMGA000936-PA|IPR004788|Ribose 5-phosphate
isomerase
(237 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-7|AAA19091.1| 251|Caenorhabditis elegans Hypothetical pr... 230 8e-61
Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical pr... 31 0.55
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 30 1.3
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 30 1.3
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF125971-7|AAD14768.2| 519|Caenorhabditis elegans Hypothetical ... 29 3.9
Z92777-7|CAI79120.1| 294|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical p... 28 5.1
Z78019-1|CAB01456.1| 662|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 27 8.9
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 27 8.9
>U10438-7|AAA19091.1| 251|Caenorhabditis elegans Hypothetical
protein B0280.3 protein.
Length = 251
Score = 230 bits (562), Expect = 8e-61
Identities = 113/232 (48%), Positives = 150/232 (64%), Gaps = 4/232 (1%)
Query: 3 LEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAK 61
+EQAK+ AA+ +++V + C GVGSGSTV Y V+ L + ++ LK + C+PTSF K
Sbjct: 14 IEQAKKRAAFACGEKYVQSGCRLGVGSGSTVKYLVEYLKQGFQNGSLKDIICVPTSFLTK 73
Query: 62 QLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIA 121
Q +I+ GL + +L+++P +DV IDGADEVD T IKGGGGCL QEKI+ + +K VIA
Sbjct: 74 QWLIESGLPVSDLDSHPELDVCIDGADEVDGQFTCIKGGGGCLAQEKIVQTAAKNFYVIA 133
Query: 122 DYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNF 181
DY KDS LGDRY VPIEV+P+A P+ I GG +LR AV K GP+VTDNGNF
Sbjct: 134 DYLKDSKHLGDRY-PNVPIEVLPLAAQPLLRSIPRAEGGSCQLRQAVKKCGPIVTDNGNF 192
Query: 182 ILDWMFAN--QNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNVVE 231
I+DW F DW + + PG+VETGLF+ +F +G+V E
Sbjct: 193 IIDWQFEKNVSGRDWFAIQQRLANTPGIVETGLFIGCVDAVFFAYSDGSVKE 244
>Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical
protein F16B12.1 protein.
Length = 655
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 85 DGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIA 121
+G EV N TL K GG CL K+ K LI+I+
Sbjct: 466 EGNVEVFVNWTLTKSGGSCLSLMKLSVDVDKPLIIIS 502
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
T04A8.14 protein.
Length = 1521
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 190 QNLDWEKVNNTI--KLIPGVVETGLFVNMCCKAYFGQPEGNVVE 231
Q++ + KV+ ++P V E GLF CCK++ G + E
Sbjct: 1137 QSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGIQE 1180
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 190 QNLDWEKVNNTI--KLIPGVVETGLFVNMCCKAYFGQPEGNVVE 231
Q++ + KV+ ++P V E GLF CCK++ G + E
Sbjct: 1137 QSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGIQE 1180
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 190 QNLDWEKVNNTI--KLIPGVVETGLFVNMCCKAYFGQPEGNVVE 231
Q++ + KV+ ++P V E GLF CCK++ G + E
Sbjct: 1137 QSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGIQE 1180
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 162 IKLRSAVAKAGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIP 205
IK +++++ +V +G +L + AN +L WE N T+ +P
Sbjct: 2416 IKFLTSLSEYIEIVASDGEELLAVLLANGSLKWENFNKTMIELP 2459
>AF125971-7|AAD14768.2| 519|Caenorhabditis elegans Hypothetical
protein Y4C6B.6 protein.
Length = 519
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 171 AGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNVV 230
A ++ D GN++ W+ N LD + N K V++ + VN + Y+ QP +V+
Sbjct: 384 ANDLIKDMGNWVGGWVDWNYILDLQGGPNLAK---NFVDSTIIVNATAQEYYKQPIWHVM 440
>Z92777-7|CAI79120.1| 294|Caenorhabditis elegans Hypothetical
protein C17H1.10 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.1
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 38 QRLAERVES----EKLKVTCIPTSFQAK--QLIIKHGLNLGELETNP-NIDVTIDGADEV 90
QR RVE EKLK I Q K Q I+K + E N + + +
Sbjct: 65 QRAEYRVEHHETMEKLKQKKIEEIAQQKKEQQILKMEEMKAKSERNVMEHQIRMTNMNYA 124
Query: 91 DSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKD-SVKLGDRYK---KGVPIEVIPMA 146
+ ++ I+ G L K + SC K + VI+D KD + D+Y +++I
Sbjct: 125 QNMLSNIESGQASLAVIKHMESCIKSVNVISDLLKDLKILCEDKYNYDYSPTDMKIIKYM 184
Query: 147 YVPIKNKIISLYGGEIKLRSAVAK---AGPVVTDNGNFILDWMFANQNLDWEKVNNTIKL 203
I+ KI + +L S++++ A P V D+ + + + + +Q ++W ++
Sbjct: 185 SDKIEKKISKFEFQKQQLESSISQESDADPQVVDDCSEMSNKI--DQCMEWSDFHSVCTT 242
Query: 204 IP 205
+P
Sbjct: 243 LP 244
>Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical
protein C17G1.7 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 26 GVGSGSTVVYAVQRLAERVESEKLKVTCIPT 56
G+ SG+ V A+Q A + KL VTC+P+
Sbjct: 269 GISSGANVAAALQLAARPEMAGKLIVTCLPS 299
>Z78019-1|CAB01456.1| 662|Caenorhabditis elegans Hypothetical
protein ZK863.4 protein.
Length = 662
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 156 SLYGGEIKLRSAVAKAGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFV 214
++YG + + ++ A V ++ ++D M N+ + + +KL+ G++ LF+
Sbjct: 403 AIYGKKAMQKKTLSSAHGGVEESPLMLMDPMDITHNISAKVTEDAVKLLNGLIRNALFI 461
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 180 NFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQ 224
+F+ +MF + D E V IKL P VE + C Y G+
Sbjct: 298 HFVKKYMFTHNTYDSEIVEALIKLDPTDVELTYMIAQLCFEYAGK 342
>Z81044-9|CAB02812.2| 677|Caenorhabditis elegans Hypothetical
protein C30H6.6 protein.
Length = 677
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 82 VTIDGADEVDSNMTLIKGGGGCLLQEKIIASCS 114
VT+DG D D N T + G + QE ++ +CS
Sbjct: 470 VTVDGVDLRDLNATTWRHAIGTVGQEPVLFTCS 502
>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
protein ZC434.5 protein.
Length = 1149
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 101 GGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGG 160
G LL E++ A+ K+ ++ ++K+G KKG I I A + + N
Sbjct: 545 GKKLLLEQVDAAALKEGEIVTFVNWGNIKIGKIEKKGAVITKI-SATLQLDNTDYKKTTK 603
Query: 161 EIKLRSAVAKAG---PVVTDNGNFILDWMFANQNLDWEKVNN 199
L A+AG PVVT + + I+ ++ DW++ N
Sbjct: 604 VTWLGDVKAEAGKTIPVVTADYDHIISKAIIGKDEDWKQFIN 645
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 8.9
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 5 QAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLI 64
Q ++VAA +V + V + GV G V YA++ E SEK + + ++
Sbjct: 493 QPRRVAA-MSVARRVADE--MGVDLGQDVGYAIR--FEDCTSEKTII-----KYMTDGIL 542
Query: 65 IKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYT 124
++ L G L+ I +D A E N ++ G LL+E I KLIV + T
Sbjct: 543 LRECLGDGSLDQYSAI--IMDEAHERSLNTDVLFG----LLREVIAKRADLKLIVTSA-T 595
Query: 125 KDSVKLGDRYKKGVPIEVIPMAYVPIK 151
D+ K D + P IP P++
Sbjct: 596 MDADKFADFFGGNCPTFTIPGRTFPVE 622
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.5 bits (58), Expect = 8.9
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 5 QAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLI 64
Q ++VAA +V + V + GV G V YA++ E SEK + + ++
Sbjct: 493 QPRRVAA-MSVARRVADE--MGVDLGQDVGYAIR--FEDCTSEKTII-----KYMTDGIL 542
Query: 65 IKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYT 124
++ L G L+ I +D A E N ++ G LL+E I KLIV + T
Sbjct: 543 LRECLGDGSLDQYSAI--IMDEAHERSLNTDVLFG----LLREVIAKRADLKLIVTSA-T 595
Query: 125 KDSVKLGDRYKKGVPIEVIPMAYVPIK 151
D+ K D + P IP P++
Sbjct: 596 MDADKFADFFGGNCPTFTIPGRTFPVE 622
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,748,204
Number of Sequences: 27539
Number of extensions: 242194
Number of successful extensions: 549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 16
length of query: 237
length of database: 12,573,161
effective HSP length: 79
effective length of query: 158
effective length of database: 10,397,580
effective search space: 1642817640
effective search space used: 1642817640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -