Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000934-TA|BGIBMGA000934-PA|IPR001148|Carbonic anhydrase,
eukaryotic
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    31   0.22 
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    28   1.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   2.0  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   2.7  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.2  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.2  

>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 71  TRHHINITGGPLSYKYQFHEIHIHYGLHDQFGSEHAI 107
           T HH + +GG L+ K +F  + I YG  DQ G  H +
Sbjct: 62  THHHADHSGGNLNLKKEFPHVTI-YGGSDQNGVSHVL 97


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 152 LPDTDYYMTYDGSTTAPACFETVTWIIVNKPIYITKQQLH 191
           +P  DY+  Y+G  +  +    + W+ VN  I   K  ++
Sbjct: 281 VPFQDYFPQYEGKNSVKSITRYILWLFVNPSINRAKHNIY 320


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 15/133 (11%)

Query: 41  NLRFLHIDKHRINGLISNTGHSVIFTVENETRHHIN--ITGGPLSYKYQFHE---IHIHY 95
           NL+ + ID++      S   H    +  + + H +N  I  G + ++ +  E    HI  
Sbjct: 31  NLQSVSIDRNS-----SIDSHETDLSAGSSSLHGLNSLIDSGSIHWQLREQEQSNSHISR 85

Query: 96  GLHDQFGSEHAINGYSFPAELGDLSNPELRVLTEELENIKYGGAEMPVN-KLSVRGLLPD 154
             ++ F  E++I   +F   LG   NP+   ++ E  N +Y   E+P +  L     +PD
Sbjct: 86  NENELFSKENSIYNGNFSENLGVQPNPQ--TISHESVNEEY--TELPYDAHLPSEQKVPD 141

Query: 155 TDYYMTYDGSTTA 167
             + +T+   T A
Sbjct: 142 RKWGLTFGFLTLA 154


>SPAC1805.15c |pub2||ubiquitin-protein ligase
          Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 34 EKLLFDPNLRFLHIDKHRINGLISNTGHSVIFTVENETRHHINITGGPLSYKYQF 88
          E + F+  L  LH++    NGL+ +    ++ +V+++     N+  G L   + F
Sbjct: 2  ENIRFEVQLTILHVEGLWKNGLLRSLKPYLLISVDDDQFIKTNVASGTLRLSWGF 56


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 153 PDTDYYMTYDGSTTAPACFETVTWIIVNKPIY 184
           P++ Y + +  S+   AC E+  W+I +  +Y
Sbjct: 130 PESPYLLFFSNSSRFSACEESGEWVIYSGDVY 161


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 22   KGRRQSPVNLEPEKLLFDPNLRFLHIDKHRI 52
            K R     N+  E ++ +P +RFL  D H I
Sbjct: 1100 KKRLAKKNNVSAESIIIEPKIRFLEKDGHDI 1130


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 101 FGSE-HAINGYSFPAELGDLSNPELRVLTEELEN-IKYG 137
           FG+E H +N   F   +GD+  P LR +++ L N  KYG
Sbjct: 336 FGAEAHFMNKLEFSITIGDIEAP-LRRVSKRLRNPKKYG 373


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 114 AELGDLSNPELRVLTEELENIKYGGAEMPVNKLSVRGLLPD 154
           A+L D++ PE + +  E       G    VNK ++R ++P+
Sbjct: 105 AQLTDVNTPEYQRMQWEALKKSINGLINKVNKSNIRDIIPE 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,789
Number of Sequences: 5004
Number of extensions: 63013
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 8
length of query: 257
length of database: 2,362,478
effective HSP length: 71
effective length of query: 186
effective length of database: 2,007,194
effective search space: 373338084
effective search space used: 373338084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)