Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000933-TA|BGIBMGA000933-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    27   0.82 
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   2.5  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   4.4  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   7.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   7.6  

>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 72  LIGGSKPKVATPAVVSKIEQYKRENP 97
           L+G      +TP +V K++Q+++ENP
Sbjct: 278 LMGDVAGGSSTPGMVKKVQQWQKENP 303


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 57  RNAAVKFLRTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 96
           R +AV+  RT +  GLI G+  +  +P V+  ++   R+N
Sbjct: 298 RYSAVEKARTAKKFGLIQGTLGRQGSPKVLENLKNTLRKN 337


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 71  GLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRE 106
           G++GG    + T   +++ ++YK+    IF +E +E
Sbjct: 14  GIVGGGIIGICTAFYLTEEQEYKKGELDIFIFESKE 49


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 67  LRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEI 104
           + P G   G   +  TP   S+IE+ K E+  I  + I
Sbjct: 583 IHPRGYKCGGNERNLTPEATSEIEREKNESKDISTFNI 620


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 71   GLIGGSKPKVATPAVVSKIEQYKRE--NPTIFAWEIRERLIS 110
            G+   SKP    P V+  IE+YK     P       +E LIS
Sbjct: 1265 GVAQTSKPSFDAPLVLEAIEKYKNALGAPDTATKSCKENLIS 1306


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,088
Number of Sequences: 5004
Number of extensions: 18669
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 5
length of query: 121
length of database: 2,362,478
effective HSP length: 65
effective length of query: 56
effective length of database: 2,037,218
effective search space: 114084208
effective search space used: 114084208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)