GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000933-TA|BGIBMGA000933-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (121 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        79   2e-17
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   3.3  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   4.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   5.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   5.8  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 78.6 bits (185), Expect = 2e-17
 Identities = 32/44 (72%), Positives = 41/44 (93%)

Query: 70  PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
           PG+IGGSKP+VATP V ++IEQYKRENP+IF+WEIR+RL+ EG+
Sbjct: 102 PGVIGGSKPRVATPEVENRIEQYKRENPSIFSWEIRDRLVKEGI 145


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 12  TLVTYIIVIVNIAKKLPRSKLETIVLSVWT 41
           T+VTY++V++     +P     T   ++ T
Sbjct: 403 TMVTYLVVLLQFQISIPEEASPTNSTTITT 432


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 13  LVTYIIVIVNIAKKLPRSK 31
           +VTY ++++   KK+ R +
Sbjct: 381 VVTYELIVIQFRKKMERDE 399


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 96  NPTIFAWEIRERLISEGLERGL 117
           N T   W   + ++++G+ERG+
Sbjct: 143 NATNTVWSHCQCVLADGVERGI 164


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 96  NPTIFAWEIRERLISEGLERGL 117
           N T   W   + ++++G+ERG+
Sbjct: 143 NATNTVWSHCQCVLADGVERGI 164


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,754
Number of Sequences: 317
Number of extensions: 972
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 121
length of database: 114,650
effective HSP length: 50
effective length of query: 71
effective length of database: 98,800
effective search space:  7014800
effective search space used:  7014800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)