Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000933-TA|BGIBMGA000933-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
(121 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1045 - 30400162-30400434,30400763-30400835,30400931-304010... 30 0.58
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 28 2.3
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 27 3.1
01_06_0252 + 27889652-27892450 27 4.1
06_03_0713 + 23811483-23811846,23811964-23812019 26 7.1
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 26 7.1
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394... 26 7.1
01_06_1617 - 38678668-38678925,38679015-38679117,38680629-38681290 26 7.1
12_02_0916 - 24271151-24271894 26 9.4
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 26 9.4
>04_04_1045 -
30400162-30400434,30400763-30400835,30400931-30401042,
30401151-30401348,30401685-30401856
Length = 275
Score = 29.9 bits (64), Expect = 0.58
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 72 LIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGLERGLR 118
L G K V ++EQYK+E P E RLI E + + LR
Sbjct: 167 LAGPHKDPPCMNVVAKQMEQYKKETPEGITLEEFRRLIMEWVRKDLR 213
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 48 NVPWSPAAGRNAAVKFLRTLRPPGLIGGSKPKVATPAVVSKIEQYKRENP 97
N+PW +++ L L+P LI P T + V + Y ++P
Sbjct: 1304 NIPWQWMQQNRTSLETLEILKPENLIWAVSPAKLTISEVQDVSPYCVQDP 1353
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 13 LVTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPA 54
L T I +IV KK P + ++T L+ +G++ +++P P+
Sbjct: 391 LGTMIPIIVKEGKKRPEAPMQTAKLASESGIIIRQHIPIYPS 432
>01_06_0252 + 27889652-27892450
Length = 932
Score = 27.1 bits (57), Expect = 4.1
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 5 MDSDGHLTLVTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAAVKFL 64
+D DG L L ++ + + + +L + S T C SPA A K L
Sbjct: 705 LDGDGWLRLNELMLRVPTLIAFALQLRLLQLAWSGRTTAACSSEGETSPAPAPAAERKVL 764
Query: 65 RTLRPPGLIGGS 76
RT P L+G +
Sbjct: 765 RTCLPLYLLGAA 776
>06_03_0713 + 23811483-23811846,23811964-23812019
Length = 139
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 21 VNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAAVKFLRTLRPPGLIGGSKPKV 80
+++ KK P K I+ + TG + N P +PA K + GS P+V
Sbjct: 14 ISVQKKSPSGKFLHILHASPTGKLSVTNSPEAPAVMMTTPTKHAAAAAQSKQLLGS-PRV 72
Query: 81 ATPA 84
A+P+
Sbjct: 73 ASPS 76
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 26.2 bits (55), Expect = 7.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 20 IVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAAVKFLRTLRPPGLIGGSKPK 79
+ N A + PR K I VW K+ P S A R+ A + L+T R L +
Sbjct: 118 VYNPANQDPREKFPWITEQVWEEFYAKKSTPESRA--RSEAYRLLQT-RNQHL-----HR 169
Query: 80 VATPAVVSKIEQYKRENPTI 99
+ T K E+++RE+ +
Sbjct: 170 LGTAGYAGKEEEWQREDEEV 189
>02_01_0539 +
3941189-3941896,3942110-3942394,3942508-3943394,
3943473-3943643,3943726-3943744,3943763-3944014,
3944100-3944138,3944244-3944282
Length = 799
Score = 26.2 bits (55), Expect = 7.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 20 IVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAAVKFLRTLRPPGLIGGSKP- 78
+ N A + PR K I VW+ K+ P S A R+ A L+T G P
Sbjct: 118 VYNPANQDPREKFPWITEQVWSEFHAKKSTPESRA--RSEAYCLLQT-------GNQHPH 168
Query: 79 KVATPAVVSKIEQYKREN 96
++ T K E+++RE+
Sbjct: 169 RLGTTGYAGKEEEWQRED 186
>01_06_1617 - 38678668-38678925,38679015-38679117,38680629-38681290
Length = 340
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 49 VPWSPAAGRNAAVKFLRTLRPPGLIGGSKPKVATPAVVSKIEQYKRENP-----TIFAWE 103
VPW A A + + P L + KV+ ++V I+ + NP +F W
Sbjct: 71 VPWRGAFLFPVAAAVVASWPLPSLAAEAGGKVSLESIVVAIDDFNNRNPFFVAGAVFVWL 130
Query: 104 IRERLISE 111
+ L+ E
Sbjct: 131 VAIPLVQE 138
>12_02_0916 - 24271151-24271894
Length = 247
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 44 VCGKNVPWSPAAGRNAAVKFLRTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTI 99
VCGK P A G + + T+ G SKP T V+ + P +
Sbjct: 159 VCGKAFPTGQALGGHKRCHYDGTIGSAAGAGASKPAAKTTVAVAASRGFDLNLPAL 214
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 68 RPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEI 104
RPPG+I + P S++ + R++ T W+I
Sbjct: 565 RPPGIILNAATSFWLPVPPSRVFDFLRDDSTRSEWDI 601
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,695,908
Number of Sequences: 37544
Number of extensions: 143255
Number of successful extensions: 369
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 10
length of query: 121
length of database: 14,793,348
effective HSP length: 74
effective length of query: 47
effective length of database: 12,015,092
effective search space: 564709324
effective search space used: 564709324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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