Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000933-TA|BGIBMGA000933-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
(121 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 6e-14
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 3e-13
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 56 1e-08
SB_5629| Best HMM Match : PAX (HMM E-Value=0) 53 7e-08
SB_18288| Best HMM Match : PAX (HMM E-Value=0.058) 51 2e-07
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 6e-06
SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40) 29 0.79
SB_40163| Best HMM Match : TGS (HMM E-Value=2.8) 27 3.2
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45) 27 4.2
SB_47577| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99) 26 9.7
SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 72.9 bits (171), Expect = 6e-14
Identities = 32/44 (72%), Positives = 39/44 (88%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
PG+IGGSKPKVAT VV+KI +YK NPT+FAWEIR+RL+SEG+
Sbjct: 173 PGVIGGSKPKVATGNVVTKIAEYKLANPTMFAWEIRDRLLSEGV 216
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 70.9 bits (166), Expect = 3e-13
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
PG IGGSKPKVATP VVSKI +YK +NP IFAWEIR L+++G+
Sbjct: 44 PGAIGGSKPKVATPKVVSKILEYKDKNPCIFAWEIRNNLLADGV 87
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 55.6 bits (128), Expect = 1e-08
Identities = 19/48 (39%), Positives = 34/48 (70%)
Query: 66 TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
++ P + G S P+ TP + KI++Y+RENP +F+WE+R+RL+ + +
Sbjct: 69 SIEPGAIAGSSTPRNVTPEIEEKIDEYRRENPGMFSWEVRDRLVKDNV 116
Score = 46.0 bits (104), Expect = 8e-06
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 66 TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
++ P I K + +PAV++KIE+Y E P IF+WE+R+RL+ + L
Sbjct: 339 SVEPGAAITTFKRRDISPAVLNKIEEYVFEQPDIFSWEVRDRLLKDKL 386
>SB_5629| Best HMM Match : PAX (HMM E-Value=0)
Length = 383
Score = 52.8 bits (121), Expect = 7e-08
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
PG + +P+V T + KI+QY+ E P IF+WEIR++L+ EG+
Sbjct: 117 PGTVYKGRPRVVTSQIEKKIDQYRAEQPGIFSWEIRDQLLQEGI 160
>SB_18288| Best HMM Match : PAX (HMM E-Value=0.058)
Length = 51
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 80 VATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
VATP VVSKI +YK +NP IFAWEIR L+++G+
Sbjct: 1 VATPKVVSKILEYKDKNPCIFAWEIRNNLLADGV 34
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 66 TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
++ P I K + +PAV++KIE+Y E P IF+WEIR+RL+ + L
Sbjct: 381 SVEPGAAITTFKRRDISPAVLNKIEEYVFEQPDIFSWEIRDRLLKDKL 428
>SB_28864| Best HMM Match : Trypsin (HMM E-Value=1.4e-40)
Length = 230
Score = 29.5 bits (63), Expect = 0.79
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 75 GSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGLERG 116
G+KP + A V + Q K +P + E+ R + G ERG
Sbjct: 125 GTKPAILREAQVQLVPQDKCNSPQSYNGEVSGRALCAGFERG 166
>SB_40163| Best HMM Match : TGS (HMM E-Value=2.8)
Length = 642
Score = 27.5 bits (58), Expect = 3.2
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 1 MIEYMDSDGHLTLVTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAA 60
++++ S H + +++V++++ K PR+ + WT V G+ + RN+A
Sbjct: 540 IMQWRSSAPHFEEI-HVLVVLDLPLKCPRTLKSRLKSETWT--VSGRKL-------RNSA 589
Query: 61 VKFLRTL--RPPGLIGGSKP 78
K LR L RP LI +P
Sbjct: 590 AKMLRKLIDRPSQLIYYDRP 609
>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
Length = 727
Score = 27.1 bits (57), Expect = 4.2
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 13 LVTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAAVKFLRTLRPPGL 72
+V + +I KK+P +K I S W +V V + A ++ + KF+ +L +
Sbjct: 441 VVLFASLIFYCEKKIPGTKFVDIPSSFWWAVVTMTTVGYGDMAPQSPSGKFIGSL--CAV 498
Query: 73 IGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGLERGLRA 119
G + P +V+ Y + R + G L+A
Sbjct: 499 CGVLTIALPVPVIVNNFSLYYSHAQARLKLPKKRRRVLVGAPNALKA 545
>SB_47577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 83 PAVVSKIEQYKRENPTIFAWEIRE 106
PA++ + NP FAWE+R+
Sbjct: 247 PAILPPVSSVTPLNPNRFAWELRD 270
>SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99)
Length = 681
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 56 GRNAAVKFLRTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRER 107
G N KFL P L + A E+Y++ TI W+ + R
Sbjct: 559 GGNYLAKFLSNDESPALAEKERHDKALEKYQQDYERYQQRRQTILDWQAQSR 610
>SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 11 LTLVTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVP 50
+ L Y +I KL +SK+ I+ +W G G +P
Sbjct: 129 IALERYRAIINPFKPKLSKSKVLIIIGLIWVGCYAGTGLP 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,993,723
Number of Sequences: 59808
Number of extensions: 142995
Number of successful extensions: 331
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 13
length of query: 121
length of database: 16,821,457
effective HSP length: 74
effective length of query: 47
effective length of database: 12,395,665
effective search space: 582596255
effective search space used: 582596255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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