Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000933-TA|BGIBMGA000933-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
(121 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical pr... 73 6e-14
Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical pr... 69 1e-12
U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box... 69 1e-12
AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein p... 69 1e-12
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 66 9e-12
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 66 9e-12
U53336-9|AAA96181.1| 257|Caenorhabditis elegans Pax (paired box... 61 2e-10
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z48582-6|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z81593-6|CAB04740.2| 367|Caenorhabditis elegans Hypothetical pr... 26 6.4
AF067612-6|AAU05568.1| 470|Caenorhabditis elegans Egg laying de... 26 6.4
AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying de... 26 6.4
AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying de... 26 6.4
AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying de... 26 6.4
AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 26 6.4
>Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical
protein Y53C12C.1 protein.
Length = 314
Score = 72.9 bits (171), Expect = 6e-14
Identities = 32/37 (86%), Positives = 36/37 (97%)
Query: 75 GSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 111
G+KPKVATP VV+KIEQYKR+NPTIFAWEIRE+LISE
Sbjct: 48 GTKPKVATPQVVAKIEQYKRDNPTIFAWEIREKLISE 84
>Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical
protein C04G2.7 protein.
Length = 289
Score = 68.5 bits (160), Expect = 1e-12
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 111
PG+IGGSKPKVATP VV I YKR NPT+FAWEIR++LI +
Sbjct: 93 PGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIED 134
>U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 2 protein.
Length = 351
Score = 68.5 bits (160), Expect = 1e-12
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 111
PG+IGGSKPKVATP VV I YKR NPT+FAWEIR++LI +
Sbjct: 155 PGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIED 196
>AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein
protein.
Length = 289
Score = 68.5 bits (160), Expect = 1e-12
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 111
PG+IGGSKPKVATP VV I YKR NPT+FAWEIR++LI +
Sbjct: 93 PGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIED 134
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 65.7 bits (153), Expect = 9e-12
Identities = 29/48 (60%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 66 TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
T+RP IGGSKP+VAT VV KIE YKR+ P+IFAWEIR++L+++ +
Sbjct: 66 TIRPRA-IGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNI 112
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 65.7 bits (153), Expect = 9e-12
Identities = 29/48 (60%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 66 TLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
T+RP IGGSKP+VAT VV KIE YKR+ P+IFAWEIR++L+++ +
Sbjct: 66 TIRPRA-IGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNI 112
>U53336-9|AAA96181.1| 257|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 1 protein.
Length = 257
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 70 PGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLIS 110
PG IGGS+P+V TP VV I KR +P IFAWEIR+RLIS
Sbjct: 125 PGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLIS 165
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 70 PGLIGGS-KPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
PG IGGS + ++ AV +I ENP + A E+R+ LI + +
Sbjct: 77 PGQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDI 121
>Z48582-6|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 70 PGLIGGS-KPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEGL 113
PG IGGS + ++ AV +I ENP + A E+R+ LI + +
Sbjct: 77 PGQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDI 121
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 72 LIGGSKPKVATPAVVSKIEQYKRENPTI 99
+I G K K TPA V K + KR P++
Sbjct: 636 VISGQKIKRPTPAAVKKSNETKRNQPSL 663
>Z81593-6|CAB04740.2| 367|Caenorhabditis elegans Hypothetical
protein T20B3.12 protein.
Length = 367
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 36 VLSVWTGMVCGKNVP----WSPAAGRNAAVKFLRTLRPPGL 72
V ++WTG++C N P W +G AA P G+
Sbjct: 167 VKNLWTGLICDNNDPSLCTWDVQSGTTAAYNNFAKGYPSGV 207
>AF067612-6|AAU05568.1| 470|Caenorhabditis elegans Egg laying
defective protein 4,isoform f protein.
Length = 470
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 65 RTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 96
RTL+PP L PKV+ PA V+ + Y +N
Sbjct: 430 RTLKPPIL-----PKVSNPADVTNFDNYPPDN 456
>AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying
defective protein 4,isoform c protein.
Length = 749
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 65 RTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 96
RTL+PP L PKV+ PA V+ + Y +N
Sbjct: 709 RTLKPPIL-----PKVSNPADVTNFDNYPPDN 735
>AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying
defective protein 4,isoform e protein.
Length = 743
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 65 RTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 96
RTL+PP L PKV+ PA V+ + Y +N
Sbjct: 703 RTLKPPIL-----PKVSNPADVTNFDNYPPDN 729
>AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying
defective protein 4,isoform b protein.
Length = 737
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 65 RTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 96
RTL+PP L PKV+ PA V+ + Y +N
Sbjct: 697 RTLKPPIL-----PKVSNPADVTNFDNYPPDN 723
>AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying
defective protein 4,isoform a protein.
Length = 780
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 65 RTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 96
RTL+PP L PKV+ PA V+ + Y +N
Sbjct: 740 RTLKPPIL-----PKVSNPADVTNFDNYPPDN 766
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,808
Number of Sequences: 27539
Number of extensions: 104872
Number of successful extensions: 217
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 16
length of query: 121
length of database: 12,573,161
effective HSP length: 73
effective length of query: 48
effective length of database: 10,562,814
effective search space: 507015072
effective search space used: 507015072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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