GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000933-TA|BGIBMGA000933-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (121 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    30   0.49 
At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim...    27   2.6  
At5g24380.1 68418.m02874 transporter, putative similar to iron-p...    27   2.6  
At1g78050.1 68414.m09095 phosphoglycerate/bisphosphoglycerate mu...    27   2.6  
At4g30350.1 68417.m04313 heat shock protein-related contains sim...    26   6.0  
At5g22200.1 68418.m02584 harpin-induced family protein / HIN1 fa...    26   7.9  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    26   7.9  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    26   7.9  
At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    26   7.9  

>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 19  VIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAA 55
           +IV + +K+ R K E +V +V +G++CG+ +   PAA
Sbjct: 611 LIVFVWEKMNRKKAEFMVPAVASGLICGEGLWTLPAA 647


>At5g66350.1 68418.m08365 zinc finger protein, putative (SHI)
           similar to lateral root primordium 1 (LRP1) [Arabidopsis
           thaliana] GI:882341; contains Pfam profile PF05142:
           Domain of unknown function (DUF702); identical to cDNA
           putative zinc finger protein SHI (SHI)  GI:4929802
          Length = 331

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 42  GMVCGKNVP--WSPAAGRNAAVKFLRTLRPPGLIGGSKPK 79
           G+ C  +V   W PAA R    + L T + P  +GGS PK
Sbjct: 144 GLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPK 183


>At5g24380.1 68418.m02874 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 652

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 19  VIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSPAAGRNAAVKFLRTLRPP 70
           ++V + KK+ R K + +V +V +G++CG  + W   +   A  K    +RPP
Sbjct: 597 LVVYVWKKVNRKKADVMVPAVASGLICGDGL-WILPSSLLALAK----VRPP 643


>At1g78050.1 68414.m09095 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to SP|P31217
           Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli
           O157:H7}; contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 332

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 65  RTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE--GLERGLRAE 120
           R  + P ++     K  T + V   E  K+  P I AW++ ER+  E  GL +   AE
Sbjct: 148 RRKKVPIILHNESVKAKTWSHVFSEETRKQSIPVIAAWQLNERMYGELQGLNKKETAE 205


>At4g30350.1 68417.m04313 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 924

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 42  GMVCGKNVPWSPAAGRNAAVKFLRTLRPPGLIGGSKPKVATPAVVSKIE 90
           GM  G  +  +  A R   +      R P L+G S+P +    ++ KIE
Sbjct: 227 GMQSGMMIQRTDEAKRVIEIMIRTRKRNPVLVGDSEPHILVKEILEKIE 275


>At5g22200.1 68418.m02584 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein
           similar to harpin-induced protein hin1 ( GI:1619321)
           [Nicotiana tabacum]
          Length = 210

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 14  VTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPWSP 53
           VTY    V +A+ LP +    + ++VW+  + G  VP +P
Sbjct: 99  VTYRNQEVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAP 138


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 6/33 (18%)

Query: 43   MVCGKNVP------WSPAAGRNAAVKFLRTLRP 69
            MV GK +P      WSP AG   + +FL  LRP
Sbjct: 973  MVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRP 1005


>At2g45540.1 68415.m05663 WD-40 repeat family protein /
           beige-related contains Pfam PF02138: Beige/BEACH domain;
           contains Pfam PF00400: WD domain, G-beta repeat (3
           copies)
          Length = 2946

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 34  TIVLSVWTGMVCGKNVPWSPAAGRNAAVKFLRTLRPPGLI 73
           +++L+    +V G+ +PW P  G N      RT    GL+
Sbjct: 228 SVMLNSRAAIVSGELIPWLPGLGDNVNFMSPRTRMVRGLL 267


>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 13  LVTYIIVIVNIAKKLPRSKLETIVLSVWTGMVCGKNVPW 51
           ++T I VIV  A +L + +   I+  V +G+  G N  W
Sbjct: 625 MLTIIAVIVRTAYELKKGRTWMILALVSSGVATGMNTFW 663


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,471
Number of Sequences: 28952
Number of extensions: 105802
Number of successful extensions: 289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 9
length of query: 121
length of database: 12,070,560
effective HSP length: 73
effective length of query: 48
effective length of database: 9,957,064
effective search space: 477939072
effective search space used: 477939072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)