Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000932-TA|BGIBMGA000932-PA|IPR002048|Calcium-binding
EF-hand, IPR000048|IQ calmodulin-binding region,
IPR006186|Serine/threonine-specific protein phosphatase and
bis(5-nucleosyl)-tetraphosphatase, IPR004843|Metallophosphoesterase
         (669 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      29   0.14 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      29   0.14 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   2.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   9.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   9.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   9.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 581 DICRLMDINKDGLVDLNEFLESFRLAEKSLHEQERIRTAVDRNETGVEIEILKLDNEEQG 640
           D+   +  N D  +DL++  E+  L + +L+  E++R  + +NE   +    K    EQG
Sbjct: 297 DLSMKLSKNNDQCLDLSKTKET-NLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQG 355

Query: 641 NARGEI 646
           N   ++
Sbjct: 356 NKLADL 361


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 581 DICRLMDINKDGLVDLNEFLESFRLAEKSLHEQERIRTAVDRNETGVEIEILKLDNEEQG 640
           D+   +  N D  +DL++  E+  L + +L+  E++R  + +NE   +    K    EQG
Sbjct: 189 DLSMKLSKNNDQCLDLSKTKET-NLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQG 247

Query: 641 NARGEI 646
           N   ++
Sbjct: 248 NKLADL 253


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 526 LTVVETLYKNQRSLEAIFKILDKDNSGYITLEEFSEACQL 565
           L  +++ Y+    L A +K++  D   Y+  +  S AC+L
Sbjct: 150 LDTIKSKYRQMHRLLANYKVITSDEFFYLVSKIESLACEL 189


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 427 LTFRQRVGLVESSAMRELHNQIMMARRSLEATFRSLDSEQS 467
           LT R+R+ + ES  + E   +I    R ++A   +  +EQS
Sbjct: 208 LTRRRRIEIAESLRLTERQIKIWFQNRRMKAKKDTKFTEQS 248


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 427 LTFRQRVGLVESSAMRELHNQIMMARRSLEATFRSLDSEQS 467
           LT R+R+ + ES  + E   +I    R ++A   +  +EQS
Sbjct: 208 LTRRRRIEIAESLRLTERQIKIWFQNRRMKAKKDTKFTEQS 248


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 427 LTFRQRVGLVESSAMRELHNQIMMARRSLEATFRSLDSEQS 467
           LT R+R+ + ES  + E   +I    R ++A   +  +EQS
Sbjct: 208 LTRRRRIEIAESLRLTERQIKIWFQNRRMKAKKDTKFTEQS 248


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,250
Number of Sequences: 317
Number of extensions: 6427
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 669
length of database: 114,650
effective HSP length: 61
effective length of query: 608
effective length of database: 95,313
effective search space: 57950304
effective search space used: 57950304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)