GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000932-TA|BGIBMGA000932-PA|IPR002048|Calcium-binding
EF-hand, IPR000048|IQ calmodulin-binding region,
IPR006186|Serine/threonine-specific protein phosphatase and
bis(5-nucleosyl)-tetraphosphatase, IPR004843|Metallophosphoesterase
         (669 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   2.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   4.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   4.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   6.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 41  VKLYNFFNALLSHMMDTNGRPSSERTSRTASVLE 74
           +K +N+   +  H  DT+GR    R   T+  LE
Sbjct: 162 LKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNLE 195


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 416 QYTAAVSRTRRLTFRQRVGLVESSAMRELHNQI 448
           ++T A      ++ ++R+GL E  A++E+H+ I
Sbjct: 313 EHTEAEGGIYDISNKRRLGLTEYQAVKEMHDGI 345


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 273 VVHGGISDTTDLDMIRSLERDKYVSLLRPPVIEGSTAAESIDKVEWKQVFDI 324
           VVHG ++   D   +       Y  L+R PV+  S       K++  Q+ D+
Sbjct: 18  VVHGAVAGNPDAKRLYDDLLSNYNKLVR-PVVNTSDVLRVCIKLKLSQLIDV 68


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 273 VVHGGISDTTDLDMIRSLERDKYVSLLRPPVIEGSTAAESIDKVEWKQVFDI 324
           VVHG ++   D   +       Y  L+R PV+  S       K++  Q+ D+
Sbjct: 18  VVHGAVAGNPDAKRLYDDLLSNYNKLVR-PVVNTSDVLRVCIKLKLSQLIDV 68


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 134 KEATQVLKRLPNINVATTSISSQITVCGD 162
           +E  +  KRL   N+ TT+I S  ++ GD
Sbjct: 90  QEINKPFKRLELFNITTTTIHSIHSIDGD 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,120
Number of Sequences: 429
Number of extensions: 8697
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 5
length of query: 669
length of database: 140,377
effective HSP length: 62
effective length of query: 607
effective length of database: 113,779
effective search space: 69063853
effective search space used: 69063853
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)