GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (318 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 284 DDNIESSSGHLYGLGAPFSVNVNNFQDNGENGNSS 318
           D     S  HL  LG       ++ QD+G++G  S
Sbjct: 158 DSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGS 192


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 284 DDNIESSSGHLYGLGAPFSVNVNNFQDNGENGNSS 318
           D     S  HL  LG       ++ QD+G++G  S
Sbjct: 158 DSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGS 192


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 284 DDNIESSSGHLYGLGAPFSVNVNNFQDNGENGNSS 318
           D     S  HL  LG       ++ QD+G++G  S
Sbjct: 158 DSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGS 192


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,988
Number of Sequences: 317
Number of extensions: 3274
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 318
length of database: 114,650
effective HSP length: 57
effective length of query: 261
effective length of database: 96,581
effective search space: 25207641
effective search space used: 25207641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)