Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1070 + 33872845-33873726 283 2e-76
09_04_0126 + 14874739-14875581 274 5e-74
08_02_0807 + 21411799-21412665 254 7e-68
04_04_1644 + 35015849-35016838 172 4e-43
07_01_0499 - 3738959-3740068 136 2e-32
06_01_0276 + 2035763-2036770 130 1e-30
10_08_0041 - 14374684-14377339,14377371-14378233 116 2e-26
10_01_0149 + 1745355-1746230 111 5e-25
10_08_0032 - 14288522-14290465 107 1e-23
10_08_0036 + 14325793-14326457,14326610-14328035 98 7e-21
10_01_0124 - 1504521-1505303 96 3e-20
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 91 1e-18
06_03_0342 + 19737951-19738772 80 2e-15
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 77 2e-14
06_03_0183 + 17642639-17643428,17644507-17644949 76 4e-14
06_03_0182 + 17627434-17627922 51 1e-06
10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175 34 0.13
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 33 0.30
03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041 32 0.53
09_02_0090 - 4147108-4147191,4147629-4147697,4148089-4148343,414... 32 0.70
04_04_0178 - 23337801-23337896,23337999-23338067,23338171-233382... 30 2.8
01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803 29 4.9
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634 29 6.5
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486... 29 6.5
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398... 28 8.6
>02_05_1070 + 33872845-33873726
Length = 293
Score = 283 bits (693), Expect = 2e-76
Identities = 134/257 (52%), Positives = 181/257 (70%), Gaps = 6/257 (2%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VW NL EEF +IR VV ++ +VAMDTEFPG+V RP+G FRS ADY Y L+ NVD+
Sbjct: 30 IREVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIVCRPVGAFRSPADYNYATLKANVDM 89
Query: 109 LRIIQLGLTFMDENGKTP---PGYT--TWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRK 162
L +IQLGLTF G+ P PG WQFNF+ F+ D++A DSI+LL+ SG+ FR+
Sbjct: 90 LHLIQLGLTFSSPRGELPALGPGRRRCVWQFNFREFDDARDIFASDSIELLRRSGIDFRR 149
Query: 163 HEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESL 222
+ E G++ FAELLMSSG+VL D++ W++FH+GYDFGYLLK+LT +LP + FF+ +
Sbjct: 150 NSERGVDARRFAELLMSSGVVLNDSVYWVTFHAGYDFGYLLKILTCSSLPDTQAGFFKLM 209
Query: 223 RLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXX 282
++YFPTVYD+K+LMK C +L GGL ++A+ L++ RVG HQAGSDS +T A
Sbjct: 210 KIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVERVGESHQAGSDSLVTSCAFWKLKDSF 269
Query: 283 XDDNIESSSGHLYGLGA 299
+ E +G LYGL A
Sbjct: 270 FAGSTEKYAGVLYGLNA 286
>09_04_0126 + 14874739-14875581
Length = 280
Score = 274 bits (673), Expect = 5e-74
Identities = 130/256 (50%), Positives = 176/256 (68%), Gaps = 6/256 (2%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VW NL EF +IR++V + +VAMDTEFPGVV RP+G F+S AD+ Y L+ NVD+
Sbjct: 14 IREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNADFNYATLKANVDM 73
Query: 109 LRIIQLGLTFMDENGKTPP-----GYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRK 162
L++IQLGLTF +E+G P WQFNF+ F+ + D+ A DSIDLL+ SG+ F +
Sbjct: 74 LKLIQLGLTFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDVAAADSIDLLRRSGIDFTR 133
Query: 163 HEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESL 222
H DG + FAELLMSSG+V+ ++W++FHSGYDFGYLLKLLT LP FF+ +
Sbjct: 134 HSADGADARRFAELLMSSGVVMNSEVRWVTFHSGYDFGYLLKLLTGTYLPDTITGFFDLI 193
Query: 223 RLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXX 282
R+YFP VYD+K+LM+ C +L GGL ++A+ L++ RVG HQAGSDS LT ++
Sbjct: 194 RIYFPVVYDIKHLMRFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTALSFKKLKEAY 253
Query: 283 XDDNIESSSGHLYGLG 298
+ E +G LYGLG
Sbjct: 254 FNGLTEKYAGVLYGLG 269
>08_02_0807 + 21411799-21412665
Length = 288
Score = 254 bits (622), Expect = 7e-68
Identities = 124/262 (47%), Positives = 170/262 (64%), Gaps = 6/262 (2%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VW NL E IR V +Y +VAMDTEFPG+V RP+G FR+T ++ Y L NV++
Sbjct: 18 IREVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIVCRPVGNFRTTDEFNYANLEANVNM 77
Query: 109 LRIIQLGLTFMDENGKTPPGYT-----TWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRK 162
L++IQLGLT DE G P T WQFNF+ F+ + D DSI +L+ G+ F +
Sbjct: 78 LKLIQLGLTLSDEGGDLPRRGTGGRRCIWQFNFRGFDPRTDPSNADSIQMLRTCGIDFDR 137
Query: 163 HEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESL 222
+G +P+ FAELLMSSG+VL +++W++FHSGYDFGYLL+LLT +NLP + FF+ +
Sbjct: 138 FAAEGADPIRFAELLMSSGVVLNADVQWITFHSGYDFGYLLRLLTGRNLPDNMPAFFDLI 197
Query: 223 RLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXX 282
R+YFP +YD+K+LM+ C NL GGL + + L+++RVG HQAGSDS LT
Sbjct: 198 RIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAGSDSLLTLGCYNKIKEVY 257
Query: 283 XDDNIESSSGHLYGLGAPFSVN 304
+ E +G LYGL VN
Sbjct: 258 FKGSTEKHAGVLYGLVIEDGVN 279
>04_04_1644 + 35015849-35016838
Length = 329
Score = 172 bits (418), Expect = 4e-43
Identities = 102/256 (39%), Positives = 144/256 (56%), Gaps = 9/256 (3%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGE-FRSTADYQYQLLRCNVD 107
I+ VW HN+ EEF+IIR + + +V+MDTEFPGV+ RP TA +Y LLR NVD
Sbjct: 56 IRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVD 115
Query: 108 LLRIIQLGLTFMDENGKTPPGYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKHEED 166
L +IQ+G+T P ++ N F+ + +A +S+ LL G+ H
Sbjct: 116 ALHLIQVGITLAASPTAAPA--LAFEINLSDFDQRVHRHAAESVQLLAEHGVDLAAHRRH 173
Query: 167 GIEPLEFAELLMSSGLVLIDN-IKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLY 225
G+ A LLMSSGLV +KW++FHS YDF YL+KLL + LP+ +F +R++
Sbjct: 174 GVRASALAPLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLPRSMAEFLNLVRVF 233
Query: 226 F-PTVYDVKYLMKLC-KNLKGGLQEVADQLELRR-VGPQHQAGSDSHLT-GMAXXXXXXX 281
F VYDVK++M+ C L GGL+ VA L+++R G HQA SDS LT +
Sbjct: 234 FGDEVYDVKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRRMRELY 293
Query: 282 XXDDNIESSSGHLYGL 297
+E+ G L+GL
Sbjct: 294 FLKHGVEAYQGVLFGL 309
>07_01_0499 - 3738959-3740068
Length = 369
Score = 136 bits (330), Expect = 2e-32
Identities = 89/253 (35%), Positives = 128/253 (50%), Gaps = 16/253 (6%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG-EFRSTADYQYQLLRCNVD 107
++ VW HNL EE +I + + A+DTEFPG V RP + T +Y LL+ NVD
Sbjct: 94 VRSVWAHNLDEEANLIESLFPSFRLAAVDTEFPGTVHRPSAPAYTLTRKQKYALLKKNVD 153
Query: 108 LLRIIQLGLTFMDENGKTPPGYT------TWQFNFK-FNLQEDMYAQDSIDLLQNSGLQF 160
L ++QLGLT D G+ P T W+FNF+ F+L+ +A +SI LL++ G+ F
Sbjct: 154 ELHLVQLGLTLFDAGGRLPDLGTGGAARYVWEFNFREFDLRRHAHAPESIALLRSKGVDF 213
Query: 161 RKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLL-----TDQNLPQDE 215
+ G++ F L + ++F YD Y+LK+L LP D
Sbjct: 214 DRTRRGGVDAAAFGPRLRRWLRAGLGRAGLVTFSGAYDLAYMLKMLYGGGGGGYRLPGDA 273
Query: 216 NDF-FESLRLYFPTVYDVKYLMKLCK-NLKGGLQEVADQLELRR-VGPQHQAGSDSHLTG 272
F F + T+YDV + + C +++GGL+ VA +L +RR VG HQAGSDS LT
Sbjct: 274 ATFEFVVRAVIGRTLYDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQAGSDSLLTS 333
Query: 273 MAXXXXXXXXXDD 285
DD
Sbjct: 334 QMFMRMRERYFDD 346
>06_01_0276 + 2035763-2036770
Length = 335
Score = 130 bits (315), Expect = 1e-30
Identities = 93/261 (35%), Positives = 132/261 (50%), Gaps = 17/261 (6%)
Query: 22 SAAQKILMLMPSASFGSISLPGGSD-CGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEF 80
+A K+ PS S S + +D ++DVW NL EE + I ++ Y V+MDTEF
Sbjct: 44 TARSKLNSDAPSFSPRSPAASAAADEVEVRDVWAANLEEELRSIGALLPTYPVVSMDTEF 103
Query: 81 PGV---VARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFK 137
PG VA P T Y +++ NVD L ++QLGL G+ P WQFNF
Sbjct: 104 PGTVHDVATP--RHLRTPRESYAVVKRNVDELHLLQLGLALSGPAGRCP---VAWQFNFA 158
Query: 138 -FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSG 196
F+ + D ++ S+ +L G+ F GI+ +FA S L + W +F
Sbjct: 159 GFDARRDPHSGSSVAMLAAHGVDFTALRRHGIDHGDFARAFGRSKLA-CGRLTWAAFSGS 217
Query: 197 YDFGYLLKLLT-DQNLPQDENDFFESL-RLYFPTVYDVKYLMKLC---KNLKGGLQEVAD 251
YDF YL+K+LT + LP F + +++ P V DVK+L K C ++GGL+ VA
Sbjct: 218 YDFAYLVKVLTGGRPLPSTLEGFMAKVSKIFGPAVLDVKHLAKFCGGGGGIRGGLEHVAA 277
Query: 252 QLELRR-VGPQHQAGSDSHLT 271
L + R G H AGSDS LT
Sbjct: 278 ALGVHRAAGRAHNAGSDSLLT 298
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 116 bits (280), Expect = 2e-26
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 14/236 (5%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 105
++ VW N E+F+++ + + + H ++A+D EF A + T+ YQ +R
Sbjct: 648 VQSVWRENCMEQFKLVLEALHQPHRHLYIAVDMEFAADAATNVSHRPVTSISCYQHMRRY 707
Query: 106 VDLLRIIQLGLTF--MDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKH 163
V+ I Q+GLTF + E + P + NF FN+ Y SID L + G +H
Sbjct: 708 VNGGGIFQMGLTFAFVGEGEQAPSPLIALEINFDFNVNSPKYHGKSIDFLSSQGHDLTQH 767
Query: 164 EEDGIEPLEFAELLMSSGLVLID-NIKWLSFHSGYDFGYLLKLLTDQN------LPQDEN 216
+ G+ P EF + L D ++ W++FH YD +LL+LL + LP
Sbjct: 768 SKRGVAP-EFVYEGLLRHLPFGDGSVTWVAFHGDYDLAFLLRLLQGGDHGGNCLLPPKLA 826
Query: 217 DFFESLRLYFPTVYDVKYLMKLCKN-LKGGLQEVADQLELRRVGPQHQAGSDSHLT 271
F + +R FP VYDV+ L KL K+ G L +A+ L + R G +H AGSD+ LT
Sbjct: 827 TFLQKVREKFPVVYDVRVLGKLVKDGFNGSLTALAEYLGIPRNGDEHHAGSDALLT 882
Score = 54.8 bits (126), Expect = 9e-08
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 168 IEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLK-LLTDQNLPQDENDFFESLRLYF 226
+ P +FA+ + S G + NI W++FH + +++ L+ Q+LP + R +F
Sbjct: 1025 VHPQQFAKFMASCGALGDPNISWVTFHGAHGIARMIRSFLSPQDLPSQWCSYIGHRRAFF 1084
Query: 227 PTVYDVKYLMKLCKNL--------KGGLQEVADQLELRRVGPQHQA 264
P +YDV L++ ++ KGGL +VA L L+ + +A
Sbjct: 1085 PAIYDVALLVRRSFDIITIPWIECKGGLLDVAQALNLKEIEADMEA 1130
>10_01_0149 + 1745355-1746230
Length = 291
Score = 111 bits (268), Expect = 5e-25
Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 56 NLHEEFQIIRQVVQKYHWVAMDTEFPGVV-ARPIGEFRSTADYQYQLLRCNVDLLRIIQL 114
NLH E +IR ++ + +VA+DT+FPGVV P G TAD +Y +R N D L ++QL
Sbjct: 40 NLHREMSLIRSLMPTFPFVAVDTQFPGVVHPHPRGA-GVTADDRYAAVRANADELCLLQL 98
Query: 115 GLTFMDENGKTPPGYTT----WQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 169
G+T +G+ P W F+F F+ + +A +S+ L+ G F G+
Sbjct: 99 GITLSAADGRLPVDGALVEFMWDFDFAGFDARYHRHAPESVQFLRAQGFDFEAARLAGVP 158
Query: 170 PLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLT-DQNLPQDENDFFESLRLYFPT 228
L FA L +SG++ + + W++F YD +LL+L T LP F + F T
Sbjct: 159 ALAFAAELAASGILGLRGVTWVAFGGMYDVAFLLRLATGGAPLPATRLGFLAQVGAVFGT 218
Query: 229 -VYDVKYLMKLCKNLKGGLQEVADQLELRRVGP-QHQAGSDS 268
V+D K++ L ++ GGL V L L P +H AG +S
Sbjct: 219 QVFDAKHMASLL-HMHGGLAAVGGMLRLPPQLPRRHMAGQNS 259
>10_08_0032 - 14288522-14290465
Length = 647
Score = 107 bits (257), Expect = 1e-23
Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 22/244 (9%)
Query: 49 IKDVWNHNLHEEFQIIRQVV---QKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 105
+K VW N E+F+++ + +++ ++A+D EF I T+ Y LR
Sbjct: 158 VKSVWRENYREQFKLVVDALHQPRRHLYIAVDMEFAADATTNIRRRPVTSTGCYHHLREF 217
Query: 106 VDLLRIIQLGLTFMDENG------KTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQ 159
V+ I+Q+GL F+ G + P T + NFK N++ Y + SI L G
Sbjct: 218 VNRGDIVQMGLAFVFVGGGEQSSSSSSPPPITLEINFKINIKARKYNKKSIAFLSRQGHD 277
Query: 160 FRKHEEDGIEPLEFAELLMSSGLVLID--NIKWLSFHSGYDFGYLLKLLT-------DQN 210
R+H G+ P F E L+ L D ++ WL++HS YD G+LL+LL +
Sbjct: 278 LREHRRRGVSPRRFYEGLLRH-LPFGDGRSVTWLAYHSDYDLGFLLRLLQCGGRRRGGGD 336
Query: 211 LPQDENDFFESLRLYFPTVYDVKYLMKLCKN--LKGGLQEVADQLELRRV-GPQHQAGSD 267
LP+ F LR FP YDV+ + ++ ++ G L +A+ L +RR G H AGSD
Sbjct: 337 LPRQLAAFLRRLRENFPAFYDVRVIRQMLEDHGFSGKLTGLAEHLGIRRTGGAAHHAGSD 396
Query: 268 SHLT 271
+ LT
Sbjct: 397 ALLT 400
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 98.3 bits (234), Expect = 7e-21
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 12/235 (5%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 105
++ VW N E F+ + + H ++A D EF + + Y+ LR
Sbjct: 164 VQRVWQGNYPEMFKPVLDAFGQPHRRIYIAFDFEFAADAFTNMHCWPGCTKTNYEYLRRY 223
Query: 106 VDLLRIIQLGLTFMDENG-KTPPGYTTW--QFNFKFNLQEDMYAQDSIDLLQNSGLQFRK 162
V+ ++Q+GL F+ E+ P +T + NF F ++ Y ++I L G +
Sbjct: 224 VNGGDVVQMGLAFVFEDEVDEEPTFTAMALEINFDFTVELRKYNGEAISFLSEQGHDLTE 283
Query: 163 HEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLT-----DQNLPQDEND 217
H + G+ P L+S ++ W+++H YDFG+ L+LL +LP +
Sbjct: 284 HRDRGVVPHFVYTGLLSHLPFGNSSVTWIAYHGDYDFGFFLRLLQGGCRGSSHLPLELPT 343
Query: 218 FFESLRLYFPTVYDVKYLMKLCKN-LKGGLQEVADQLELRRVGPQHQAGSDSHLT 271
F LRL FP +YD++ L +L ++ +G L +AD L + R G H AG D+ LT
Sbjct: 344 FLHQLRLNFPRLYDIRVLGQLVQHGFRGSLTAIADLLGVNRFGRGHHAGVDALLT 398
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 168 IEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLT-DQNLPQDENDFFESLRLYF 226
+ P +F L+ S G N+ W++FH + L+ + Q+LP D + E R YF
Sbjct: 545 LHPRQFTRLMASCGATSNPNVSWVTFHGAHGIASLISSFSAPQDLPSDWPSYVEQRRAYF 604
Query: 227 PTVYDVKYLMKLCKNL--------KGGLQEVADQLEL 255
P +YDV ++ ++ KGGL +VA L+L
Sbjct: 605 PGMYDVALIVHRYPDIGILPTTGCKGGLFDVARALDL 641
>10_01_0124 - 1504521-1505303
Length = 260
Score = 96.3 bits (229), Expect = 3e-20
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 16/218 (7%)
Query: 56 NLHEEFQIIRQVVQKYHWVAMDTEFPGVVARP-IGEFRSTADYQYQLLRCNVDLLRIIQL 114
NL E +I +++ +Y +V +D EF GVV P R T D Y L+ NVD + +Q+
Sbjct: 5 NLDSEMGLIGEMMVQYPYVTIDVEFAGVVHHPPYTGSRPTPDEIYAALKSNVDEVPAVQI 64
Query: 115 GLTFMDENGKTPPGYTT-------WQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKHEED 166
G+T D G P ++ W+ F F+ D + DS++ L+N G+ F +
Sbjct: 65 GITLSDAEGNLPTRSSSSPEQEIAWEVVFSDFDAGRDPHVVDSVEFLKNQGIDFDLARQI 124
Query: 167 GIEPLEFAELLMS--SGLVLIDNIKWLSFHSGYDFGYLLKLLT-DQNLPQDENDFFESL- 222
G+ F E L++ + W +F YD GYLLK+LT Q LP+ F + +
Sbjct: 125 GVTSTAFGEKLLAILPPPSRRGELTWSAFGGAYDMGYLLKMLTGGQPLPETRQQFMQLVK 184
Query: 223 -RLYFPTVYDVKYLMKLCKN--LKGGLQEVADQLELRR 257
RL ++D KYL++ + GL+ AD L +R+
Sbjct: 185 SRLGGGRIFDSKYLVEHDRQDLRNAGLRHTADVLGVRQ 222
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 91.1 bits (216), Expect = 1e-18
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 27/240 (11%)
Query: 49 IKDVWNHNLHEEFQIIRQVV---QKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 105
+K VW N E+F+++ + +++ ++A+D EF I T+ Y LR
Sbjct: 553 VKSVWRENYREQFKLVVDALNQPRRHLYIAVDMEFAADATTNIRRRPVTSTGCYHHLREF 612
Query: 106 VDLLRIIQLGLTFM------DENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQ 159
V+ I+Q+GLTF+ + + P T + NFK N++ Y + SI L G
Sbjct: 613 VNRGDIVQMGLTFVFVGDGEQSSSSSSPPPITLEINFKINIKARKYNKKSIAFLSRQGHD 672
Query: 160 FRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLT-------DQNLP 212
R+H G+ P + G ++ WL++H YD +LL LL +LP
Sbjct: 673 LREHRRRGVSPRR-----VYDG----RSVTWLAYHGDYDLSFLLHLLQRGGRRRGGGDLP 723
Query: 213 QDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRV-GPQHQAGSDSHLT 271
+ F LR FP YDV+ + G L +A+ L +RR G H AGSD+ LT
Sbjct: 724 RQLATFLRRLRENFPAFYDVRADAE-DHGFSGKLTGLAEHLGIRRTGGAAHHAGSDALLT 782
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 172 EFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYD 231
+ AEL+ S G ++ W++FH L++ +P + ES + P++YD
Sbjct: 915 QLAELVQSCGATDNPDVSWVTFHGSDVICRLIRSANGGVIPSSISG--ES---FLPSLYD 969
Query: 232 VKYLMKLCKNL--------KGGLQEVADQLELRRVGPQHQA 264
V +++ + GG+ +VA LEL+ + +A
Sbjct: 970 VALIVRRFLGIGTLPTTERNGGIFDVARALELKAIEADKEA 1010
>06_03_0342 + 19737951-19738772
Length = 273
Score = 80.2 bits (189), Expect = 2e-15
Identities = 72/229 (31%), Positives = 104/229 (45%), Gaps = 32/229 (13%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVV---ARPIGEFRS----TADYQYQL 101
++ VW N E I+R V + A++ ++PG V A G+ R TA+ +YQ+
Sbjct: 5 VRSVWADNFAAESAILRAVAPCAVYAAINVQYPGCVVSAAGGAGDHRCYYDLTAEERYQV 64
Query: 102 LRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNF-KFNL--QEDMYAQDSIDLLQNSGL 158
+R N D L+ +QLGL +G G W+FN +F+L DM S+D L++ G+
Sbjct: 65 VRANADELKPLQLGLAVRTADG----GRFAWEFNLNEFDLAADGDMCEPGSVDYLRHRGM 120
Query: 159 QFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLL------------ 206
F G+ LL SSGL L W +F Y Y ++L
Sbjct: 121 DFNALPWSGVGAASLGRLLWSSGL-LAARPSWATFAGAYHVAYFARILMLAVAVAGTGGG 179
Query: 207 -TDQNLPQDENDFFESLR-LYFPTVYDVKYLMKLCKNLKGGLQEVADQL 253
+ LP D F E +R L VYDV+ L L+G L +VA QL
Sbjct: 180 GAARRLPADVGGFEEMVRSLLGHHVYDVRL---LAGELRGPLADVARQL 225
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 105
++ VW N E+F+++ + + + H ++A+D EF A + T+ YQ +R
Sbjct: 329 VQSVWQENCMEQFKLVLEALHQPHRNLYIAVDMEFTADAATNMSHRPVTSTSCYQHVRRY 388
Query: 106 VDLLRIIQLGLTFM---DENGKTPPGYT-TWQFNFKFNLQEDMYAQDSIDLLQNSGLQFR 161
V+ I+Q+GLTF D G+ P + NF FN+ Y +SI L + G
Sbjct: 389 VNGGDIVQMGLTFAFVGDVEGEQAPSPPIALEINFDFNVNSPKYHGESIHFLSSQGHDLT 448
Query: 162 KHEEDGIEPLEFAELLMSSGLVLID-NIKWLSFHSGYDFGYLLKLL 206
+H + G+ P EF + L D ++ W+++H YD +LL+LL
Sbjct: 449 QHSKRGVTP-EFVYEGLLRHLPFGDGSVTWVAYHGDYDLAFLLRLL 493
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 168 IEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLP 212
+ P +FA+ + S G + NI W++FH + +++ +P
Sbjct: 610 VHPQQFAKFMASCGALGDPNISWVTFHGAHGIARMIRSFDIVTIP 654
>06_03_0183 + 17642639-17643428,17644507-17644949
Length = 410
Score = 75.8 bits (178), Expect = 4e-14
Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 13/226 (5%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG-----EFRS-TADYQYQLL 102
I VW+ N E + V + VA+ ++PG G ++ S TA+ +Y ++
Sbjct: 17 IHSVWHDNFDAESAQLLAVAPRAVHVAVSVQYPGCAVAQAGTSGRKKYGSLTAEKRYDMV 76
Query: 103 RCNVDLLRIIQLGLTFMDENGKTPPG-YTTWQFN---FKFNLQEDMYAQDSIDLLQNSGL 158
+ N+D L IQ+GL + G ++FN F N D+ SI L+ G+
Sbjct: 77 KANIDELHPIQVGLAIRANDDDGDSGELVVFEFNLRGFDINNPADLRDPASIAHLRGRGV 136
Query: 159 QFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDF 218
F + G+EP LL+ SGL+ W +F Y GYL+K+LT LP + F
Sbjct: 137 DFGRLPCAGVEPHRLRLLLLGSGLLQAWP-SWATFTGAYHVGYLMKILTGAELPSGLDAF 195
Query: 219 FE-SLRLYFPTVYDVKYLMKLCKNLKG-GLQEVADQLELRRVGPQH 262
+ VYDVK L G L+E+A + + V QH
Sbjct: 196 TTMATGTLGEGVYDVKRLAAEVNTACGFSLREIAACIGVVPVAAQH 241
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 81 PGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENG 123
PG RP + TA+ +Y +L+ NVD LR IQ+GL +G
Sbjct: 297 PGGEPRPFEQL--TAEQRYGVLKANVDALRAIQVGLAIRTGDG 337
>06_03_0182 + 17627434-17627922
Length = 162
Score = 50.8 bits (116), Expect = 1e-06
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 101 LLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFN---FKFNLQEDMYAQDSIDLLQNSG 157
+++ NV+ L IQ+GL ++G ++FN F N ++ SI L+ G
Sbjct: 1 MVKANVNELHPIQVGLAIRTDDGGGE--LVVFEFNLCGFDINNPANLRDPASIAHLRGRG 58
Query: 158 LQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDEND 217
+ F + IE LL+ SGL L W +F Y GYL+K+LT +P +
Sbjct: 59 VDFGRLPHARIELHRLRSLLLGSGL-LQTRPSWATFTGAYHIGYLMKILTGAEVPSGLDA 117
Query: 218 FFE-SLRLYFPTVYDVKYL 235
F + VYDVK L
Sbjct: 118 FTAMATATLGEGVYDVKRL 136
>10_08_0527 - 18555231-18555882,18556334-18556463,18557073-18557175
Length = 294
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 15 GHKHGGFSAAQ-KILMLMPS---ASFGSIS--LPGGSDCGIKDVWNHNLHEEF 61
G KHG FS A+ +I+ M S +S+ +I+ LPG +D +K+ WN L + F
Sbjct: 54 GLKHGDFSPAEERIICKMYSKKGSSWSAIAAQLPGRTDLAVKNYWNSTLKKRF 106
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 33.1 bits (72), Expect = 0.30
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 231 DVKYLMKLCKNLKGGLQEVADQLE--LRRVG----PQHQAGSDSHLTGMAXXXXXXXXXD 284
D KY L K L+G Q V+ QL + R G + A SD G
Sbjct: 532 DSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGRSRRWASSDDSYGGRGYDSGYTSRST 591
Query: 285 DNIESSSGHLYGLGAPFSVNVNNFQDNGENGNSS 318
DN S G G G+ F + +N + G++S
Sbjct: 592 DNYNSGYGSQSGNGSSFHSSFHNSNSGNQFGDTS 625
>03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041
Length = 321
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEE 60
KHGGFS + ++L S GS LPG +D IK+ WN L ++
Sbjct: 67 KHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116
>09_02_0090 -
4147108-4147191,4147629-4147697,4148089-4148343,
4148701-4148865,4149000-4149044,4149193-4149267,
4149397-4149573,4149680-4149904,4150058-4150183
Length = 406
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 231 DVKYLMKLCKNL-KGGLQEVADQLELRRV 258
D+KY++++CKNL L EV D+ EL RV
Sbjct: 253 DIKYMLRICKNLGMTALIEVHDERELDRV 281
>04_04_0178 -
23337801-23337896,23337999-23338067,23338171-23338253,
23338694-23338772,23338956-23339120,23339230-23339274,
23339370-23339444,23340135-23340311,23340398-23340721,
23340829-23340897
Length = 393
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 231 DVKYLMKLCKNL-KGGLQEVADQLELRRV 258
D+KY++K+CK L L EV D+ E+ RV
Sbjct: 267 DIKYMLKICKILGMAALVEVHDEREMDRV 295
>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
Length = 298
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEEF 61
+HGGF+ + L+L GS LPG +D +K+ WN L + +
Sbjct: 67 RHGGFTDEEDNLILSLYGEMGSKWSVIASKLPGRTDNDVKNYWNTKLKKRY 117
>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
Length = 846
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 240 KNLKGGLQEVADQLELRRVGPQHQAGSDS 268
K L GG++ ++D LEL GPQ + D+
Sbjct: 382 KKLPGGIECISDMLELSTTGPQLEQFKDT 410
>08_02_0184 +
13947739-13947930,13948289-13948465,13948546-13948665,
13948709-13948753,13948848-13949012,13949324-13949402,
13949552-13949631,13950548-13950616,13950948-13951031
Length = 336
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 231 DVKYLMKLCKNL-KGGLQEVADQLELRRV 258
D+KY +++CK L L EV D+ E+ RV
Sbjct: 215 DIKYFLRICKELGMTALIEVHDEREMERV 243
>08_01_0451 +
3979323-3979566,3979649-3980012,3980112-3980330,
3980713-3980872,3981680-3981817,3982161-3982448
Length = 470
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 65 RQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQ 100
+ +V++Y + + TE P +VA I + TADY Y+
Sbjct: 414 KDIVKEY--LTLPTEQPKIVAETIVDLARTADYMYK 447
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,704,321
Number of Sequences: 37544
Number of extensions: 400569
Number of successful extensions: 856
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 31
length of query: 318
length of database: 14,793,348
effective HSP length: 82
effective length of query: 236
effective length of database: 11,714,740
effective search space: 2764678640
effective search space used: 2764678640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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