GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)             325   3e-89
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.076
SB_9840| Best HMM Match : Dynein_heavy (HMM E-Value=1.3)               30   2.2  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  325 bits (799), Expect = 3e-89
 Identities = 147/220 (66%), Positives = 185/220 (84%), Gaps = 1/220 (0%)

Query: 41  LPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQ 100
           +P   + GI+DVW  NL EEF  IR ++ +Y +VAMDTEFPGVVARPIGEFRSTA+YQ+Q
Sbjct: 1   MPTTVNFGIRDVWQGNLEEEFAKIRNIIDEYPYVAMDTEFPGVVARPIGEFRSTAEYQFQ 60

Query: 101 LLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQF 160
           LLRCNVDLL+IIQLG++F +++G+ P    TWQFNFKFNL EDMYAQDSIDLL  SG+QF
Sbjct: 61  LLRCNVDLLKIIQLGMSFYNDHGQQPSDGATWQFNFKFNLTEDMYAQDSIDLLNRSGIQF 120

Query: 161 RKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFE 220
           ++HEE+GI+  +FAELL++SGLVL D ++WLSFHS YDFGYL+K+LT QNL  +E++FFE
Sbjct: 121 KQHEEEGIDVNDFAELLITSGLVLRDEVRWLSFHSAYDFGYLIKVLTAQNLSSEESEFFE 180

Query: 221 SLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGP 260
            L+LYFP +YDVKYLMK CK+LKGGLQEV++ L+ +R GP
Sbjct: 181 LLKLYFPKIYDVKYLMKSCKSLKGGLQEVSELLD-KREGP 219


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 116 LTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQ 159
           LT++D N      Y +W+ ++K+NLQ  M+  +   LL + G Q
Sbjct: 323 LTYLDRNSTAYNEYFSWKKSYKYNLQHHMWICELCGLLHSGGEQ 366


>SB_9840| Best HMM Match : Dynein_heavy (HMM E-Value=1.3)
          Length = 196

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 108 LLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDG 167
           LL+   LGL FMDE  +T         +F+  +  + + Q  I LLQ+S ++F      G
Sbjct: 98  LLQNCHLGLNFMDELLETVTNTENAHESFRTWITCEAHPQFPISLLQSS-IKFTNEPPQG 156

Query: 168 IEP 170
           ++P
Sbjct: 157 VKP 159


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 108  LLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDG 167
            LL+   LGL FMDE  +T          F+  +  + + Q  I LLQ+S ++F      G
Sbjct: 4582 LLQNCHLGLNFMDELLETVTNTENAHETFRTWITCEAHPQFPISLLQSS-IKFTNEPPQG 4640

Query: 168  IEP 170
            ++P
Sbjct: 4641 VKP 4643


>SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 206 LTDQ-NLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLE 254
           +TD  N  +D+  + ESLR YF  +Y    +  +C N   GL     Q++
Sbjct: 283 ITDALNETKDKVRYLESLRKYFDQLYSGAPVGTICSNTLPGLMATVRQMD 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,609
Number of Sequences: 59808
Number of extensions: 431541
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 5
length of query: 318
length of database: 16,821,457
effective HSP length: 82
effective length of query: 236
effective length of database: 11,917,201
effective search space: 2812459436
effective search space used: 2812459436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)