Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(318 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070187-1|AAH70187.1| 285|Homo sapiens CCR4-NOT transcription ... 395 e-110
BC060852-1|AAH60852.1| 285|Homo sapiens CCR4-NOT transcription ... 395 e-110
AF086915-1|AAP97145.1| 285|Homo sapiens CAF1 protein. 395 e-110
L46722-1|AAF01500.1| 262|Homo sapiens BTG1 binding factor 1 pro... 383 e-106
BT006857-1|AAP35503.1| 292|Homo sapiens CCR4-NOT transcription ... 382 e-106
BC017366-1|AAH17366.1| 292|Homo sapiens CNOT8 protein protein. 382 e-106
AF180476-1|AAF29830.1| 292|Homo sapiens CALIFp protein. 382 e-106
AK025358-1|BAB15119.1| 292|Homo sapiens protein ( Homo sapiens ... 381 e-105
BT006685-1|AAP35331.1| 246|Homo sapiens CCR4-NOT transcription ... 377 e-104
BC007315-1|AAH07315.1| 246|Homo sapiens CNOT7 protein protein. 377 e-104
AF053318-1|AAD02685.1| 292|Homo sapiens CCR4-associated factor ... 377 e-104
AF087844-1|AAP97157.1| 292|Homo sapiens CAF2 protein. 370 e-102
BC064574-1|AAH64574.1| 851|Homo sapiens LOC150763 protein protein. 33 1.7
AK131197-1|BAD18392.1| 616|Homo sapiens 5). protein. 33 1.7
AK122580-1|BAC56921.1| 233|Homo sapiens FLJ00202 protein protein. 33 1.7
BC050029-1|AAH50029.1| 639|Homo sapiens PARN protein protein. 31 5.3
AJ005698-1|CAA06683.1| 639|Homo sapiens poly(A)-specific ribonu... 31 5.3
>BC070187-1|AAH70187.1| 285|Homo sapiens CCR4-NOT transcription
complex, subunit 7 protein.
Length = 285
Score = 395 bits (973), Expect = e-110
Identities = 183/253 (72%), Positives = 215/253 (84%), Gaps = 2/253 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IRQV++KY++VAMDTEFPGVVARPIGEFRS ADYQYQLLRCNVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTFM+E G+ PPG +TWQFNFKFNL EDMYAQDSI+LL SG+QF+KHEE+GI
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
E FAELLM+SG+VL + +KWLSFHSGYDFGYL+K+LT+ NLP++E DFFE LRL+FP
Sbjct: 132 ETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 251
Query: 289 SSS--GHLYGLGA 299
+ GHLYGLG+
Sbjct: 252 DAKYCGHLYGLGS 264
>BC060852-1|AAH60852.1| 285|Homo sapiens CCR4-NOT transcription
complex, subunit 7 protein.
Length = 285
Score = 395 bits (973), Expect = e-110
Identities = 183/253 (72%), Positives = 215/253 (84%), Gaps = 2/253 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IRQV++KY++VAMDTEFPGVVARPIGEFRS ADYQYQLLRCNVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTFM+E G+ PPG +TWQFNFKFNL EDMYAQDSI+LL SG+QF+KHEE+GI
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
E FAELLM+SG+VL + +KWLSFHSGYDFGYL+K+LT+ NLP++E DFFE LRL+FP
Sbjct: 132 ETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 251
Query: 289 SSS--GHLYGLGA 299
+ GHLYGLG+
Sbjct: 252 DAKYCGHLYGLGS 264
>AF086915-1|AAP97145.1| 285|Homo sapiens CAF1 protein.
Length = 285
Score = 395 bits (973), Expect = e-110
Identities = 183/253 (72%), Positives = 215/253 (84%), Gaps = 2/253 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IRQV++KY++VAMDTEFPGVVARPIGEFRS ADYQYQLLRCNVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTFM+E G+ PPG +TWQFNFKFNL EDMYAQDSI+LL SG+QF+KHEE+GI
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
E FAELLM+SG+VL + +KWLSFHSGYDFGYL+K+LT+ NLP++E DFFE LRL+FP
Sbjct: 132 ETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHID 251
Query: 289 SSS--GHLYGLGA 299
+ GHLYGLG+
Sbjct: 252 DAKYCGHLYGLGS 264
>L46722-1|AAF01500.1| 262|Homo sapiens BTG1 binding factor 1
protein.
Length = 262
Score = 383 bits (943), Expect = e-106
Identities = 176/238 (73%), Positives = 206/238 (86%), Gaps = 2/238 (0%)
Query: 64 IRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENG 123
IRQV++KY++VAMDTEFPGVVARPIGEFRS ADYQYQLLRCNVDLL+IIQLGLTFM+E G
Sbjct: 4 IRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG 63
Query: 124 KTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLV 183
+ PPG +TWQFNFKFNL EDMYAQDSI+LL SG+QF+KHEE+GIE FAELLM+SG+V
Sbjct: 64 EYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVV 123
Query: 184 LIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLK 243
L + +KWLSFHSGYDFGYL+K+LT+ NLP++E DFFE LRL+FP +YDVKYLMK CKNLK
Sbjct: 124 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLK 183
Query: 244 GGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIESSS--GHLYGLGA 299
GGLQEVA+QLEL R+GPQHQAGSDS LTGMA +D+I+ + GHLYGLG+
Sbjct: 184 GGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGS 241
>BT006857-1|AAP35503.1| 292|Homo sapiens CCR4-NOT transcription
complex, subunit 8 protein.
Length = 292
Score = 382 bits (940), Expect = e-106
Identities = 177/267 (66%), Positives = 213/267 (79%), Gaps = 2/267 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IR++V Y ++AMDTEFPGVV RPIGEFRS+ DYQYQLLRCNVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTF +E G+ P G TWQFNFKFNL EDMY+QDSIDLL NSGLQF+KHEE+GI
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
+ L FAELLM+SG+VL DN+KWLSFHSGYDFGY++KLLTD LP++E++FF L L+FP+
Sbjct: 132 DTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 289 SSS--GHLYGLGAPFSVNVNNFQDNGE 313
+ G LYGLG + N D+ +
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVDSAQ 278
>BC017366-1|AAH17366.1| 292|Homo sapiens CNOT8 protein protein.
Length = 292
Score = 382 bits (940), Expect = e-106
Identities = 177/267 (66%), Positives = 213/267 (79%), Gaps = 2/267 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IR++V Y ++AMDTEFPGVV RPIGEFRS+ DYQYQLLRCNVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTF +E G+ P G TWQFNFKFNL EDMY+QDSIDLL NSGLQF+KHEE+GI
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
+ L FAELLM+SG+VL DN+KWLSFHSGYDFGY++KLLTD LP++E++FF L L+FP+
Sbjct: 132 DTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 289 SSS--GHLYGLGAPFSVNVNNFQDNGE 313
+ G LYGLG + N D+ +
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVDSAQ 278
>AF180476-1|AAF29830.1| 292|Homo sapiens CALIFp protein.
Length = 292
Score = 382 bits (940), Expect = e-106
Identities = 177/267 (66%), Positives = 213/267 (79%), Gaps = 2/267 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IR++V Y ++AMDTEFPGVV RPIGEFRS+ DYQYQLLRCNVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTF +E G+ P G TWQFNFKFNL EDMY+QDSIDLL NSGLQF+KHEE+GI
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
+ L FAELLM+SG+VL DN+KWLSFHSGYDFGY++KLLTD LP++E++FF L L+FP+
Sbjct: 132 DTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 289 SSS--GHLYGLGAPFSVNVNNFQDNGE 313
+ G LYGLG + N D+ +
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVDSAQ 278
>AK025358-1|BAB15119.1| 292|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21705 fis, clone COL09940. ).
Length = 292
Score = 381 bits (937), Expect = e-105
Identities = 176/267 (65%), Positives = 213/267 (79%), Gaps = 2/267 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IR++V Y ++AMDTEFPGVV RPIGEFRS+ DYQYQLLRCNVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTF +E G+ P G TWQFNFKFNL EDMY+QDSIDLL NSGLQF+KHEE+GI
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
+ L FAELLM+SG+VL DN++WLSFHSGYDFGY++KLLTD LP++E++FF L L+FP+
Sbjct: 132 DTLHFAELLMTSGVVLCDNVRWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 289 SSS--GHLYGLGAPFSVNVNNFQDNGE 313
+ G LYGLG + N D+ +
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVDSAQ 278
>BT006685-1|AAP35331.1| 246|Homo sapiens CCR4-NOT transcription
complex, subunit 7 protein.
Length = 246
Score = 377 bits (927), Expect = e-104
Identities = 173/226 (76%), Positives = 199/226 (88%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IRQV++KY++VAMDTEFPGVVARPIGEFRS ADYQYQLLRCNVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTFM+E G+ PPG +TWQFNFKFNL EDMYAQDSI+LL SG+QF+KHEE+GI
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
E FAELLM SG+VL + +KWLSFHSGYDFGYL+K+LT+ NLP++E DFFE LRL+FP
Sbjct: 132 ETQYFAELLMISGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMA 274
+YDVKYLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTG A
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGNA 237
>BC007315-1|AAH07315.1| 246|Homo sapiens CNOT7 protein protein.
Length = 246
Score = 377 bits (927), Expect = e-104
Identities = 173/226 (76%), Positives = 199/226 (88%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IRQV++KY++VAMDTEFPGVVARPIGEFRS ADYQYQLLRCNVDL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTFM+E G+ PPG +TWQFNFKFNL EDMYAQDSI+LL SG+QF+KHEE+GI
Sbjct: 72 LKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
E FAELLM SG+VL + +KWLSFHSGYDFGYL+K+LT+ NLP++E DFFE LRL+FP
Sbjct: 132 ETQYFAELLMISGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMA 274
+YDVKYLMK CKNLKGGLQEVA+QLEL R+GPQHQAGSDS LTG A
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGNA 237
>AF053318-1|AAD02685.1| 292|Homo sapiens CCR4-associated factor 1
protein.
Length = 292
Score = 377 bits (927), Expect = e-104
Identities = 175/267 (65%), Positives = 211/267 (79%), Gaps = 2/267 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IR++V Y ++AMDTEFPGVV RPIGEFRS+ DYQYQLLRCNVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVPSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTF +E G+ P G TWQFNFKFNL EDMY+QDSIDLL NSGLQF+KHEE+GI
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
+ L FAELLM+SG+VL DN+KWLSFHSGYDFGY++KLLTD LP++E++F L L+ P+
Sbjct: 132 DTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFLHILNLFSPS 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 289 SSS--GHLYGLGAPFSVNVNNFQDNGE 313
+ G LYGLG + N D+ +
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVDSAQ 278
>AF087844-1|AAP97157.1| 292|Homo sapiens CAF2 protein.
Length = 292
Score = 370 bits (911), Expect = e-102
Identities = 173/267 (64%), Positives = 209/267 (78%), Gaps = 2/267 (0%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I +VW NL EE + IR++V Y ++AMDTEFPGVV RPIGEFRS+ DYQYQLLRCNVDL
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 109 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
L+IIQLGLTF +E G+ P G TWQFN K L DMY+QDSIDLL NSGLQF+KHEE+GI
Sbjct: 72 LKIIQLGLTFTNEKGEYPSGINTWQFNCKLYLTVDMYSQDSIDLLANSGLQFQKHEEEGI 131
Query: 169 EPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPT 228
+ L FAELLM+SG+VL DN+KWLSFHSGYDFGY++KLLTD LP++E++FF L L+FP+
Sbjct: 132 DTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPS 191
Query: 229 VYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNIE 288
+YDVKYLMK CKNLKGGLQEVADQL+L+R+G QHQAGSDS LTGMA +D+I+
Sbjct: 192 IYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSID 251
Query: 289 SSS--GHLYGLGAPFSVNVNNFQDNGE 313
+ G LYGLG + N D+ +
Sbjct: 252 DAKYCGRLYGLGTGVAQKQNEDVDSAQ 278
>BC064574-1|AAH64574.1| 851|Homo sapiens LOC150763 protein protein.
Length = 851
Score = 32.7 bits (71), Expect = 1.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 58 HEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLT 117
H++ + Q++ ++ W+ + G G+ RS + LLR +V LLRI Q L
Sbjct: 471 HQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGDLL 530
Query: 118 FMDENGKTPPGYT 130
+ + G PG T
Sbjct: 531 VVPQPG---PGLT 540
>AK131197-1|BAD18392.1| 616|Homo sapiens 5). protein.
Length = 616
Score = 32.7 bits (71), Expect = 1.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 58 HEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLT 117
H++ + Q++ ++ W+ + G G+ RS + LLR +V LLRI Q L
Sbjct: 289 HQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGDLL 348
Query: 118 FMDENGKTPPGYT 130
+ + G PG T
Sbjct: 349 VVPQPG---PGLT 358
>AK122580-1|BAC56921.1| 233|Homo sapiens FLJ00202 protein protein.
Length = 233
Score = 32.7 bits (71), Expect = 1.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 58 HEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLT 117
H++ + Q++ ++ W+ + G G+ RS + LLR +V LLRI Q L
Sbjct: 48 HQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGDLL 107
Query: 118 FMDENGKTPPGYT 130
+ + G PG T
Sbjct: 108 VVPQPG---PGLT 117
>BC050029-1|AAH50029.1| 639|Homo sapiens PARN protein protein.
Length = 639
Score = 31.1 bits (67), Expect = 5.3
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARP----IGEFRSTADYQYQLLRC 104
I+ + NLH+ +Q I + + A+D EF G+ P + T + +YQ L+
Sbjct: 4 IRSNFKSNLHKVYQAIEEA----DFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKK 59
Query: 105 NVDLLRIIQLGL-TFMDENGKTPPGYTTWQFNF-----KFNLQED----MYAQDSIDLLQ 154
+ + Q GL TF + T Y T FNF FN + SID L
Sbjct: 60 HSMDFLLFQFGLCTF--KYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLA 117
Query: 155 NSGLQFRKHEEDGIEPLEFAE 175
+ G F K +GI L E
Sbjct: 118 SQGFDFNKVFRNGIPYLNQEE 138
>AJ005698-1|CAA06683.1| 639|Homo sapiens poly(A)-specific
ribonuclease protein.
Length = 639
Score = 31.1 bits (67), Expect = 5.3
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARP----IGEFRSTADYQYQLLRC 104
I+ + NLH+ +Q I + + A+D EF G+ P + T + +YQ L+
Sbjct: 4 IRSNFKSNLHKVYQAIEEA----DFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKK 59
Query: 105 NVDLLRIIQLGL-TFMDENGKTPPGYTTWQFNF-----KFNLQED----MYAQDSIDLLQ 154
+ + Q GL TF + T Y T FNF FN + SID L
Sbjct: 60 HSMDFLLFQFGLCTF--KYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLA 117
Query: 155 NSGLQFRKHEEDGIEPLEFAE 175
+ G F K +GI L E
Sbjct: 118 SQGFDFNKVFRNGIPYLNQEE 138
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,302,970
Number of Sequences: 224733
Number of extensions: 1974482
Number of successful extensions: 3055
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3034
Number of HSP's gapped (non-prelim): 21
length of query: 318
length of database: 73,234,838
effective HSP length: 90
effective length of query: 228
effective length of database: 53,008,868
effective search space: 12086021904
effective search space used: 12086021904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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