GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (318 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001837-1|AAN71594.1|  293|Drosophila melanogaster RH51274p pro...   473   e-133
AY047553-1|AAK77285.1|  297|Drosophila melanogaster GH06247p pro...   473   e-133
AE014296-2079|AAN12249.1|  293|Drosophila melanogaster CG5684-PC...   473   e-133
AE014296-2078|AAN12248.1|  293|Drosophila melanogaster CG5684-PB...   473   e-133
AE014296-2077|AAF49972.2|  297|Drosophila melanogaster CG5684-PA...   473   e-133
BT001830-1|AAN71585.1|  293|Drosophila melanogaster RH46192p pro...   471   e-133
AY122139-1|AAM52651.1|  271|Drosophila melanogaster GM14316p pro...   301   8e-82
U11052-1|AAA61568.1| 1535|Drosophila melanogaster peroxidasin pr...    31   2.8  
AY051536-1|AAK92960.1| 1311|Drosophila melanogaster GH18946p pro...    30   3.7  
AE014296-487|AAS64948.1| 1527|Drosophila melanogaster CG12002-PE...    30   3.7  
AE014296-486|AAS64947.1| 1527|Drosophila melanogaster CG12002-PD...    30   3.7  
AE014296-485|AAS64946.1| 1527|Drosophila melanogaster CG12002-PC...    30   3.7  
AE014296-484|AAF47668.1| 1527|Drosophila melanogaster CG12002-PA...    30   3.7  

>BT001837-1|AAN71594.1|  293|Drosophila melanogaster RH51274p
           protein.
          Length = 293

 Score =  473 bits (1165), Expect = e-133
 Identities = 218/293 (74%), Positives = 250/293 (85%), Gaps = 5/293 (1%)

Query: 31  MPSASFGS--ISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI 88
           MPSA  G+    +P   +CGI+DVW  NL EEF+ IR+VVQKYH+VAMDTEFPGVVARP+
Sbjct: 1   MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPV 60

Query: 89  GEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD 148
           GEFRSTADY YQLLRCNVDLLRIIQLGLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQD
Sbjct: 61  GEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQD 120

Query: 149 SIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD 208
           SIDLLQNSG+QF+KHEEDGI+P++FAELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTD
Sbjct: 121 SIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD 180

Query: 209 QNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDS 268
           QNLP DE++FF+ L +YFP ++D+KYLMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+
Sbjct: 181 QNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDA 240

Query: 269 HLTGMAXXXXXXXXXDDNIESS--SGHLYGLGAPFSVNVNNFQD-NGENGNSS 318
            LTGMA         +DNI+ +  SGHLYGLG  F VN  NF D NGE  ++S
Sbjct: 241 LLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS 293


>AY047553-1|AAK77285.1|  297|Drosophila melanogaster GH06247p
           protein.
          Length = 297

 Score =  473 bits (1165), Expect = e-133
 Identities = 218/293 (74%), Positives = 250/293 (85%), Gaps = 5/293 (1%)

Query: 31  MPSASFGS--ISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI 88
           MPSA  G+    +P   +CGI+DVW  NL EEF+ IR+VVQKYH+VAMDTEFPGVVARP+
Sbjct: 5   MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPV 64

Query: 89  GEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD 148
           GEFRSTADY YQLLRCNVDLLRIIQLGLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQD
Sbjct: 65  GEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQD 124

Query: 149 SIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD 208
           SIDLLQNSG+QF+KHEEDGI+P++FAELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTD
Sbjct: 125 SIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD 184

Query: 209 QNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDS 268
           QNLP DE++FF+ L +YFP ++D+KYLMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+
Sbjct: 185 QNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDA 244

Query: 269 HLTGMAXXXXXXXXXDDNIESS--SGHLYGLGAPFSVNVNNFQD-NGENGNSS 318
            LTGMA         +DNI+ +  SGHLYGLG  F VN  NF D NGE  ++S
Sbjct: 245 LLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS 297


>AE014296-2079|AAN12249.1|  293|Drosophila melanogaster CG5684-PC,
           isoform C protein.
          Length = 293

 Score =  473 bits (1165), Expect = e-133
 Identities = 218/293 (74%), Positives = 250/293 (85%), Gaps = 5/293 (1%)

Query: 31  MPSASFGS--ISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI 88
           MPSA  G+    +P   +CGI+DVW  NL EEF+ IR+VVQKYH+VAMDTEFPGVVARP+
Sbjct: 1   MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPV 60

Query: 89  GEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD 148
           GEFRSTADY YQLLRCNVDLLRIIQLGLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQD
Sbjct: 61  GEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQD 120

Query: 149 SIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD 208
           SIDLLQNSG+QF+KHEEDGI+P++FAELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTD
Sbjct: 121 SIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD 180

Query: 209 QNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDS 268
           QNLP DE++FF+ L +YFP ++D+KYLMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+
Sbjct: 181 QNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDA 240

Query: 269 HLTGMAXXXXXXXXXDDNIESS--SGHLYGLGAPFSVNVNNFQD-NGENGNSS 318
            LTGMA         +DNI+ +  SGHLYGLG  F VN  NF D NGE  ++S
Sbjct: 241 LLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS 293


>AE014296-2078|AAN12248.1|  293|Drosophila melanogaster CG5684-PB,
           isoform B protein.
          Length = 293

 Score =  473 bits (1165), Expect = e-133
 Identities = 218/293 (74%), Positives = 250/293 (85%), Gaps = 5/293 (1%)

Query: 31  MPSASFGS--ISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI 88
           MPSA  G+    +P   +CGI+DVW  NL EEF+ IR+VVQKYH+VAMDTEFPGVVARP+
Sbjct: 1   MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPV 60

Query: 89  GEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD 148
           GEFRSTADY YQLLRCNVDLLRIIQLGLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQD
Sbjct: 61  GEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQD 120

Query: 149 SIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD 208
           SIDLLQNSG+QF+KHEEDGI+P++FAELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTD
Sbjct: 121 SIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD 180

Query: 209 QNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDS 268
           QNLP DE++FF+ L +YFP ++D+KYLMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+
Sbjct: 181 QNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDA 240

Query: 269 HLTGMAXXXXXXXXXDDNIESS--SGHLYGLGAPFSVNVNNFQD-NGENGNSS 318
            LTGMA         +DNI+ +  SGHLYGLG  F VN  NF D NGE  ++S
Sbjct: 241 LLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS 293


>AE014296-2077|AAF49972.2|  297|Drosophila melanogaster CG5684-PA,
           isoform A protein.
          Length = 297

 Score =  473 bits (1165), Expect = e-133
 Identities = 218/293 (74%), Positives = 250/293 (85%), Gaps = 5/293 (1%)

Query: 31  MPSASFGS--ISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI 88
           MPSA  G+    +P   +CGI+DVW  NL EEF+ IR+VVQKYH+VAMDTEFPGVVARP+
Sbjct: 5   MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPV 64

Query: 89  GEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD 148
           GEFRSTADY YQLLRCNVDLLRIIQLGLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQD
Sbjct: 65  GEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQD 124

Query: 149 SIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD 208
           SIDLLQNSG+QF+KHEEDGI+P++FAELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTD
Sbjct: 125 SIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD 184

Query: 209 QNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDS 268
           QNLP DE++FF+ L +YFP ++D+KYLMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+
Sbjct: 185 QNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDA 244

Query: 269 HLTGMAXXXXXXXXXDDNIESS--SGHLYGLGAPFSVNVNNFQD-NGENGNSS 318
            LTGMA         +DNI+ +  SGHLYGLG  F VN  NF D NGE  ++S
Sbjct: 245 LLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS 297


>BT001830-1|AAN71585.1|  293|Drosophila melanogaster RH46192p
           protein.
          Length = 293

 Score =  471 bits (1160), Expect = e-133
 Identities = 217/293 (74%), Positives = 250/293 (85%), Gaps = 5/293 (1%)

Query: 31  MPSASFGS--ISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI 88
           MPSA  G+    +P   +CGI+DVW  NL EEF+ IR+VVQKYH+VAMDTEFPGVVARP+
Sbjct: 1   MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPV 60

Query: 89  GEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD 148
           GEFRSTADY YQLLRCNVDLLRIIQLGLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQD
Sbjct: 61  GEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQD 120

Query: 149 SIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD 208
           SIDLLQNSG+QF+KHEEDGI+P++FAELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTD
Sbjct: 121 SIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTD 180

Query: 209 QNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDS 268
           QNLP DE++FF+ L +YFP ++++KYLMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+
Sbjct: 181 QNLPPDESEFFDLLHIYFPNIFNIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDA 240

Query: 269 HLTGMAXXXXXXXXXDDNIESS--SGHLYGLGAPFSVNVNNFQD-NGENGNSS 318
            LTGMA         +DNI+ +  SGHLYGLG  F VN  NF D NGE  ++S
Sbjct: 241 LLTGMAFFKMREMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS 293


>AY122139-1|AAM52651.1|  271|Drosophila melanogaster GM14316p
           protein.
          Length = 271

 Score =  301 bits (739), Expect = 8e-82
 Identities = 132/160 (82%), Positives = 151/160 (94%)

Query: 115 GLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEPLEFA 174
           GLTFMD++GKTPPGY+TWQFNFKFNL EDMYAQDSIDLLQNSG+QF+KHEEDGI+P++FA
Sbjct: 1   GLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFA 60

Query: 175 ELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKY 234
           ELLMSSG+VL++NIKWL FHSGYDFGYLLKLLTDQNLP DE++FF+ L + FP ++D+KY
Sbjct: 61  ELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIIFPNIFDIKY 120

Query: 235 LMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMA 274
           LMK CKNLKGGLQEVADQLELRRVGPQHQAGSD+ LTGMA
Sbjct: 121 LMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMA 160


>U11052-1|AAA61568.1| 1535|Drosophila melanogaster peroxidasin
           precursor protein.
          Length = 1535

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 106 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEE 165
           +DL     L + F + + K PP Y      F+F   E      + ++ + + +  RKH +
Sbjct: 672 IDLAINNTLDMLFSNRSDKAPPNYDELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 731

Query: 166 DG------IEPLEFAELLMSSGLVLIDNIKWLSFH 194
           +G       E  EF +LL    L L+  +     H
Sbjct: 732 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEH 766


>AY051536-1|AAK92960.1| 1311|Drosophila melanogaster GH18946p
           protein.
          Length = 1311

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 106 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEE 165
           +DL     L + F + + K PP Y      F+F   E      + ++ + + +  RKH +
Sbjct: 452 IDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 511

Query: 166 DG------IEPLEFAELLMSSGLVLIDNIKWLSFH 194
           +G       E  EF +LL    L L+  +     H
Sbjct: 512 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEH 546


>AE014296-487|AAS64948.1| 1527|Drosophila melanogaster CG12002-PE,
           isoform E protein.
          Length = 1527

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 106 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEE 165
           +DL     L + F + + K PP Y      F+F   E      + ++ + + +  RKH +
Sbjct: 668 IDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 727

Query: 166 DG------IEPLEFAELLMSSGLVLIDNIKWLSFH 194
           +G       E  EF +LL    L L+  +     H
Sbjct: 728 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEH 762


>AE014296-486|AAS64947.1| 1527|Drosophila melanogaster CG12002-PD,
           isoform D protein.
          Length = 1527

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 106 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEE 165
           +DL     L + F + + K PP Y      F+F   E      + ++ + + +  RKH +
Sbjct: 668 IDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 727

Query: 166 DG------IEPLEFAELLMSSGLVLIDNIKWLSFH 194
           +G       E  EF +LL    L L+  +     H
Sbjct: 728 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEH 762


>AE014296-485|AAS64946.1| 1527|Drosophila melanogaster CG12002-PC,
           isoform C protein.
          Length = 1527

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 106 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEE 165
           +DL     L + F + + K PP Y      F+F   E      + ++ + + +  RKH +
Sbjct: 668 IDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 727

Query: 166 DG------IEPLEFAELLMSSGLVLIDNIKWLSFH 194
           +G       E  EF +LL    L L+  +     H
Sbjct: 728 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEH 762


>AE014296-484|AAF47668.1| 1527|Drosophila melanogaster CG12002-PA,
           isoform A protein.
          Length = 1527

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 106 VDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEE 165
           +DL     L + F + + K PP Y      F+F   E      + ++ + + +  RKH +
Sbjct: 668 IDLAINNTLDMLFSNRSDKAPPNYGELLRVFRFPTGEARQLARAAEIYERTLVNIRKHVQ 727

Query: 166 DG------IEPLEFAELLMSSGLVLIDNIKWLSFH 194
           +G       E  EF +LL    L L+  +     H
Sbjct: 728 EGDNLTMKSEEYEFRDLLSREHLHLVAELSGCMEH 762


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,243
Number of Sequences: 52641
Number of extensions: 710856
Number of successful extensions: 1451
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 13
length of query: 318
length of database: 24,830,863
effective HSP length: 85
effective length of query: 233
effective length of database: 20,356,378
effective search space: 4743036074
effective search space used: 4743036074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)