Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(318 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 245 3e-65
AL132860-29|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 245 3e-65
AL117195-21|CAB55029.1| 490|Caenorhabditis elegans Hypothetical... 36 0.038
Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 32 0.62
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 30 2.5
U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 7.6
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 245 bits (600), Expect = 3e-65
Identities = 125/285 (43%), Positives = 181/285 (63%), Gaps = 12/285 (4%)
Query: 31 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 86
M S+S G GG+ + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA
Sbjct: 1 MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60
Query: 87 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYA 146
P+G FRS D+ YQ + CNV++L++IQ+G +++ G+ PP WQFNF F+ EDM++
Sbjct: 61 PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFS 120
Query: 147 QDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLL 206
+S+++L+ +G+ F + +GI F ELL +SGL+ I WL+F SGYDFGYLLK +
Sbjct: 121 HESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSI 180
Query: 207 TDQNLPQDENDFFESLRLYFPTVYDVKYLMKL--CKN--LKGGLQEVADQLELRRVGPQH 262
T +LP++E+ FF + FPT +D+K L++ C + LKGGLQEVADQL+++R G +H
Sbjct: 181 TLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRH 240
Query: 263 QAGSDSHLTGMAXXXXXXXXXDDNIESSS----GHLYGLGAPFSV 303
QAGSD+ LT DN + GH++GLG+ S+
Sbjct: 241 QAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGLGSSLSL 285
>AL132860-29|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 245 bits (600), Expect = 3e-65
Identities = 125/285 (43%), Positives = 181/285 (63%), Gaps = 12/285 (4%)
Query: 31 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 86
M S+S G GG+ + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA
Sbjct: 1 MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60
Query: 87 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYA 146
P+G FRS D+ YQ + CNV++L++IQ+G +++ G+ PP WQFNF F+ EDM++
Sbjct: 61 PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFS 120
Query: 147 QDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLL 206
+S+++L+ +G+ F + +GI F ELL +SGL+ I WL+F SGYDFGYLLK +
Sbjct: 121 HESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSI 180
Query: 207 TDQNLPQDENDFFESLRLYFPTVYDVKYLMKL--CKN--LKGGLQEVADQLELRRVGPQH 262
T +LP++E+ FF + FPT +D+K L++ C + LKGGLQEVADQL+++R G +H
Sbjct: 181 TLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRH 240
Query: 263 QAGSDSHLTGMAXXXXXXXXXDDNIESSS----GHLYGLGAPFSV 303
QAGSD+ LT DN + GH++GLG+ S+
Sbjct: 241 QAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGLGSSLSL 285
>AL117195-21|CAB55029.1| 490|Caenorhabditis elegans Hypothetical
protein Y57A10A.25 protein.
Length = 490
Score = 35.9 bits (79), Expect = 0.038
Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 15/216 (6%)
Query: 33 SASFGSIS---LPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG 89
SA GS S +P S+ + +V N + + + ++ + A+D E G+ + +
Sbjct: 12 SAGDGSTSKDKIPAFSEIRVIEVNRDNFAKIWPYLLVCIKSADFTAIDLELSGLGGKGLR 71
Query: 90 EFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPG----YTTWQFNF-KFNLQEDM 144
R A+ +YQ +R I+ +G+ M K+ Y T FN F+ +
Sbjct: 72 S-RDIAE-RYQAIRDAAHTRSILSVGIATMKLTHKSEKRRALRYETQVFNILTFSEKPFT 129
Query: 145 YAQDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGY-DFGYLL 203
++ L F + + G+ L + L+ + H+G+ D ++
Sbjct: 130 IEPSALQFLAKHSFDFNRLIQSGVRFQGANCPLKTLFRELLGSSATFCLHNGFIDLAFIY 189
Query: 204 KLLTDQNLPQDENDFFESLRLYFPTVY----DVKYL 235
K L D +LP + F +L FP Y D KYL
Sbjct: 190 KQLYDIDLPDTLDGFVNNLSDMFPDNYLPVADSKYL 225
>Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical
protein K10C8.1 protein.
Length = 566
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 73 WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDE 121
+VA+D EF G+ I T + +YQ+LR NV R QLGLT +
Sbjct: 25 FVAIDFEFLGLDVSAIS-LHDTVESRYQILRDNVIKYRPCQLGLTLFKQ 72
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
protein T20G5.1 protein.
Length = 1681
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 36 FGSISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYH 72
FGS+S+ +C +K + N+ + Q++ Q+ KYH
Sbjct: 657 FGSLSVEDSVEC-LKAMLTQNIRQNLQVVVQIASKYH 692
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 47 CGIKDVWNHNLHEEFQIIRQVVQKYH 72
CG ++ H HEEF +VV KYH
Sbjct: 330 CGAQNEHEHTHHEEFSKTDKVVNKYH 355
>U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical
protein F19C7.3 protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 46 DCGIKDVWNHNLHEEFQIIRQVVQKYHWV 74
DC + +W H LH Q+I Q + YHW+
Sbjct: 202 DCKVIKLWRHQLHP--QLINQFI--YHWM 226
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 52 VWNHNLHEEFQIIRQVVQKYHWVAMD 77
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>Z75956-4|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 52 VWNHNLHEEFQIIRQVVQKYHWVAMD 77
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 52 VWNHNLHEEFQIIRQVVQKYHWVAMD 77
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,263,398
Number of Sequences: 27539
Number of extensions: 348492
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 12
length of query: 318
length of database: 12,573,161
effective HSP length: 81
effective length of query: 237
effective length of database: 10,342,502
effective search space: 2451172974
effective search space used: 2451172974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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