Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000931-TA|BGIBMGA000931-PA|IPR006941|Ribonuclease CAF1,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(318 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 293 1e-79
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 293 1e-79
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 291 5e-79
At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,... 272 2e-73
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 250 9e-67
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 250 9e-67
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,... 218 5e-57
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 212 3e-55
At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,... 128 4e-30
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 122 2e-28
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 122 3e-28
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,... 120 1e-27
At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,... 117 9e-27
At5g57620.1 68418.m07198 myb family transcription factor (MYB36)... 32 0.44
At3g49690.1 68416.m05433 myb family transcription factor contain... 30 2.4
At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138... 29 3.1
At5g65790.1 68418.m08278 myb family transcription factor (MYB68)... 29 4.1
At5g48220.1 68418.m05957 indole-3-glycerol phosphate synthase, p... 29 5.4
At5g23000.1 68418.m02688 myb family transcription factor (MYB37)... 29 5.4
At5g02700.1 68418.m00208 F-box family protein low similarity to ... 28 7.2
At1g16490.1 68414.m01972 myb family transcription factor (MYB58)... 28 7.2
At4g37780.1 68417.m05347 myb family transcription factor (MYB87)... 28 9.5
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 293 bits (719), Expect = 1e-79
Identities = 139/255 (54%), Positives = 180/255 (70%), Gaps = 5/255 (1%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VWN NL EE +IR VV + +VAMDTEFPG+V RP+G F+S ADY Y+ L+ NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 109 LRIIQLGLTFMDENGKTPP----GYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKH 163
L++IQLGLTF +E G P Y WQFNF+ F+L D++A DSI+LL+ SG+ K+
Sbjct: 72 LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131
Query: 164 EEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLR 223
DGI+ FAELLMSSG+VL +N+ W++FHSGYDFGYLLKLLT QNLP + DFF+ +
Sbjct: 132 TLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLIN 191
Query: 224 LYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXX 283
+YFPTVYD+K+LMK C +L GGL ++A+ LE+ RVG HQAGSDS LT
Sbjct: 192 VYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFF 251
Query: 284 DDNIESSSGHLYGLG 298
+ SG LYGLG
Sbjct: 252 VGPLHKYSGVLYGLG 266
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 293 bits (719), Expect = 1e-79
Identities = 139/255 (54%), Positives = 180/255 (70%), Gaps = 5/255 (1%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VWN NL EE +IR VV + +VAMDTEFPG+V RP+G F+S ADY Y+ L+ NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 109 LRIIQLGLTFMDENGKTPP----GYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKH 163
L++IQLGLTF +E G P Y WQFNF+ F+L D++A DSI+LL+ SG+ K+
Sbjct: 72 LKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131
Query: 164 EEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLR 223
DGI+ FAELLMSSG+VL +N+ W++FHSGYDFGYLLKLLT QNLP + DFF+ +
Sbjct: 132 TLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLIN 191
Query: 224 LYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXX 283
+YFPTVYD+K+LMK C +L GGL ++A+ LE+ RVG HQAGSDS LT
Sbjct: 192 VYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFF 251
Query: 284 DDNIESSSGHLYGLG 298
+ SG LYGLG
Sbjct: 252 VGPLHKYSGVLYGLG 266
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 291 bits (713), Expect = 5e-79
Identities = 137/256 (53%), Positives = 182/256 (71%), Gaps = 6/256 (2%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VWN NL E +IR+VV + +VAMDTEFPG+V RP+G F++ +Y Y+ L+ NV++
Sbjct: 12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71
Query: 109 LRIIQLGLTFMDENGKTPP-----GYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRK 162
L++IQLGLTF DE G P Y WQFNF+ F+L+ D+YA DSI+LL+ SG+ F K
Sbjct: 72 LKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVK 131
Query: 163 HEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESL 222
+ E GI+ FAELLMSSG+VL +N+ W++FHSGYDFGYLLKLLT QNLP+ + FFE +
Sbjct: 132 NNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMI 191
Query: 223 RLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXX 282
+YFP VYD+K+LMK C +L GGL ++A+ L++ RVG HQAGSDS LT
Sbjct: 192 SVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQENF 251
Query: 283 XDDNIESSSGHLYGLG 298
++E SG LYGLG
Sbjct: 252 FIGSMEKYSGVLYGLG 267
>At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 277
Score = 272 bits (668), Expect = 2e-73
Identities = 130/255 (50%), Positives = 178/255 (69%), Gaps = 5/255 (1%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 108
I++VW++NL EEF +IR++V K+ ++AMDTEFPGVV +P+ F+ D Y+ L+ NVDL
Sbjct: 12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDL 71
Query: 109 LRIIQLGLTFMDENGKTPP----GYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKH 163
L++IQ+GLTF DENG P + WQFNF+ FN+ ED+YA +SI+LL+ G+ F+K+
Sbjct: 72 LKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKN 131
Query: 164 EEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLR 223
E GI+ + F EL+MSSG+VL D I W++FH GYDFGYL+KLLT + LP + DFF+ L
Sbjct: 132 IEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLY 191
Query: 224 LYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXX 283
+YFPTVYD+K+LM C L GGL +A+ + + RVG HQAGSDS LT +
Sbjct: 192 VYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERYF 251
Query: 284 DDNIESSSGHLYGLG 298
+ E +G LYGLG
Sbjct: 252 PGSTEKYTGVLYGLG 266
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 250 bits (612), Expect = 9e-67
Identities = 122/263 (46%), Positives = 169/263 (64%), Gaps = 11/263 (4%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI------GEFRSTADYQYQLL 102
I++VWNHNL +E +I Q + + +VAMDTEFPG+V + + + +Y Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 103 RCNVDLLRIIQLGLTFMDENGKTPPGYTT----WQFNFK-FNLQEDMYAQDSIDLLQNSG 157
+ NV++L++IQLGLT DE G P T WQFNF+ FN+ DM+A DSI+LL+ S
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135
Query: 158 LQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDEND 217
+ K+ E G++ FAELLM SG+VL D I W++FH GYDFGYLLKLL+ + LP++ +D
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISD 195
Query: 218 FFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXX 277
FF+ + +FP VYD+KYLM C NL GGL+++A+ L ++RVG HQAGSDS LT
Sbjct: 196 FFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIK 255
Query: 278 XXXXXXDDNIESSSGHLYGLGAP 300
++ SG L+GL P
Sbjct: 256 MKEFFFTGSLLKYSGFLFGLDNP 278
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 250 bits (612), Expect = 9e-67
Identities = 122/263 (46%), Positives = 169/263 (64%), Gaps = 11/263 (4%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI------GEFRSTADYQYQLL 102
I++VWNHNL +E +I Q + + +VAMDTEFPG+V + + + +Y Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 103 RCNVDLLRIIQLGLTFMDENGKTPPGYTT----WQFNFK-FNLQEDMYAQDSIDLLQNSG 157
+ NV++L++IQLGLT DE G P T WQFNF+ FN+ DM+A DSI+LL+ S
Sbjct: 76 KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135
Query: 158 LQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDEND 217
+ K+ E G++ FAELLM SG+VL D I W++FH GYDFGYLLKLL+ + LP++ +D
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISD 195
Query: 218 FFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXX 277
FF+ + +FP VYD+KYLM C NL GGL+++A+ L ++RVG HQAGSDS LT
Sbjct: 196 FFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIK 255
Query: 278 XXXXXXDDNIESSSGHLYGLGAP 300
++ SG L+GL P
Sbjct: 256 MKEFFFTGSLLKYSGFLFGLDNP 278
>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 218 bits (532), Expect = 5e-57
Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 13/262 (4%)
Query: 49 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEF--RSTADYQYQLLRCNV 106
I+DVW +NL EF +IR +V+ Y +++MDTEFPGV+ + + R +Y Y LL+ NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 107 DLLRIIQLGLTFMDENGKTPP--GYTT----WQFNFK-FNLQEDMYAQDSIDLLQNSGLQ 159
D L +IQ+GLT D +G P G W+FNF+ F+++ D +A DSI+LL+ G+
Sbjct: 74 DALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGID 133
Query: 160 FRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFF 219
F ++ +G+E FAEL+MSSGL+ +++ W++FHS YDFGYL+K+LT + LP +F
Sbjct: 134 FERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFL 193
Query: 220 ESLRLYF-PTVYDVKYLMKLC-KNLKGGLQEVADQLELRR-VGPQHQAGSDSHLTGMA-X 275
LR +F VYDVK++M+ C + L GGL VA LE+ R VG HQAGSDS LT A
Sbjct: 194 GLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQ 253
Query: 276 XXXXXXXXDDNIESSSGHLYGL 297
+D E +G LYGL
Sbjct: 254 RMRDLYFVEDGAEKHAGVLYGL 275
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 212 bits (517), Expect = 3e-55
Identities = 118/268 (44%), Positives = 162/268 (60%), Gaps = 14/268 (5%)
Query: 42 PGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQL 101
P G ++VW NL EF++I +++ Y +++MDTEFPGV+ + F + D Y L
Sbjct: 12 PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 70
Query: 102 LRCNVDLLRIIQLGLTFMDENGKTPP-------GYTTWQFNFK-FNLQEDMYAQDSIDLL 153
L+ NVD L +IQ+GLT D NG P G+ W+FNF+ F++ D +A DSI+LL
Sbjct: 71 LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFI-WEFNFRDFDVARDAHAPDSIELL 129
Query: 154 QNSGLQFRKHEEDGIEPLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQ 213
+ G+ F ++ DG+E FAEL+MSSGLV + + W++FHS YDFGYL+K+LT + LP
Sbjct: 130 RRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPG 189
Query: 214 DENDFFESLRLYF-PTVYDVKYLMKLC-KNLKGGLQEVADQLELRR-VGPQHQAGSDSHL 270
+F +R+ F VYDVK++MK C + L GGL VA LE+ R VG HQAGSDS L
Sbjct: 190 ALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLL 249
Query: 271 TGMA-XXXXXXXXXDDNIESSSGHLYGL 297
T A D E +G LYGL
Sbjct: 250 TWHAFQRMRDLYFVQDGPEKHAGVLYGL 277
>At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 128 bits (310), Expect = 4e-30
Identities = 87/229 (37%), Positives = 124/229 (54%), Gaps = 19/229 (8%)
Query: 51 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 110
+VW N E IR ++ + +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKET--PMDASDEIRYRDMKFNVDNTH 61
Query: 111 IIQLGLTFMDENGKTPPGYT-TWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 168
+IQLGLT GK G T TW+ N FN + + SI L+N+GL K E+GI
Sbjct: 62 LIQLGLTLF---GK---GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGI 115
Query: 169 EPLEFAELLMSSGLVLIDN---IKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLR-L 224
EF M +L + ++W++F YD YLLK LT + LP+ +F E+++ L
Sbjct: 116 GIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQL 172
Query: 225 YFPTVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQAGSDSHLT 271
VYDVK + LC L GLQ +AD L++RRVG H AGSDS LT
Sbjct: 173 LGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELT 221
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 122 bits (295), Expect = 2e-28
Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 7/213 (3%)
Query: 63 IIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDEN 122
+I ++ Y ++A+DTEFP + +T + +Y + +VD ++IQLGLT D N
Sbjct: 3 LIEDCLRSYRFIAIDTEFPSTLRETTQH--ATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60
Query: 123 GKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEPLEFAELLMSSGL 182
G+ TW+ NF +D + SI+ L+ +GL RK E+GI F +
Sbjct: 61 GRIGG---TWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLK 117
Query: 183 VLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKYLMKLCKNL 242
NI W++FH YD YLLK T + LP F +++ +VYD+K + C+ L
Sbjct: 118 KTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGL 177
Query: 243 KG--GLQEVADQLELRRVGPQHQAGSDSHLTGM 273
GL+ +A + L RVG H AGS++ LT M
Sbjct: 178 SSRLGLETLAHEFGLNRVGTAHHAGSNNELTAM 210
>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
putative contains similarity to SWISS-PROT:Q9UFF9
CCR4-NOT transcription complex, subunit 8 (CAF1-like
protein, CALIFp) [Human]
Length = 302
Score = 122 bits (294), Expect = 3e-28
Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Query: 51 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 110
+VW N E IR ++ + +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 60
Query: 111 IIQLGLTFMDENGKTPPGYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIE 169
+IQLG T D G T TW+ N FN + SI L+++GL K E+GI
Sbjct: 61 LIQLGFTLFDRRGITK----TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIG 116
Query: 170 PLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD-QNLPQDENDFFESL-RLYFP 227
EF I W++F YD YL+K LT + LP+ + +F E++ +L
Sbjct: 117 IEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGK 176
Query: 228 TVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQAGSDSHLT 271
V+DVK + + C L GLQ +AD L+++RVG H AGSDS LT
Sbjct: 177 FVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELT 222
>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 360
Score = 120 bits (289), Expect = 1e-27
Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 11/251 (4%)
Query: 52 VWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRI 111
VW N+ EE + + ++++ +A DTE+PG++ R F S++D Y+ ++ NV+ ++
Sbjct: 12 VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENTKL 69
Query: 112 IQLGLTFMDENGKTPPGYTTWQFNFK-FNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEP 170
IQ G T + G+ W+ NF F D + SI+ L+ GL +K ++G++
Sbjct: 70 IQCGFTLFNAKGEIGG---VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDM 126
Query: 171 LEFAEL-LMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTV 229
+ + + ++++++F YDF Y L +L LP+ +F + F V
Sbjct: 127 FGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQV 186
Query: 230 YDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXXDDNI 287
YD K + C+ L GL ++A L++ RVG H AGSDS +T + D
Sbjct: 187 YDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRF 246
Query: 288 ESSSGHLYGLG 298
+ G +YG+G
Sbjct: 247 --ARGLIYGIG 255
>At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 310
Score = 117 bits (282), Expect = 9e-27
Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 11/226 (4%)
Query: 51 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 110
+VW N E IR ++ +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 65
Query: 111 IIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQD-SIDLLQNSGLQFRKHEEDGIE 169
+IQLG T D G TW+ N + + D SI L+++GL K E+GI
Sbjct: 66 LIQLGFTLFDRRGFAK----TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIG 121
Query: 170 PLEFAELLMSSGLVLIDNIKWLSFHSGYDFGYLLKLLTD-QNLPQDENDFFESLR-LYFP 227
EF I W++F YD YL+K LT + LP+ + +F E+++ L
Sbjct: 122 IDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGK 181
Query: 228 TVYDVKYLMKLCKNLKG--GLQEVADQLELRRVGPQHQAGSDSHLT 271
V+DVK + + C L GLQ +AD L+++RVG H AGSDS LT
Sbjct: 182 FVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELT 227
>At5g57620.1 68418.m07198 myb family transcription factor (MYB36)
contains PFAM profile: myb DNA binding domain PF00249
Length = 333
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEE 60
KHGGFS + ++L S GS LPG +D IK+ WN L ++
Sbjct: 67 KHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK 116
>At3g49690.1 68416.m05433 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 310
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEE 60
KHGGFS ++ ++ + GS LPG +D IK+ WN L ++
Sbjct: 67 KHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116
>At1g52630.1 68414.m05943 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 439
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 21 FSAAQKILMLMPSASFGSISLPGGSDCGIKDVWN 54
FS +++L PS I P GS G D+W+
Sbjct: 16 FSLLLVVILLSPSPHILQIPFPSGSSVGSSDIWS 49
>At5g65790.1 68418.m08278 myb family transcription factor (MYB68)
identical to putative transcription factor (MYB68)
GI:3941493 from [Arabidopsis thaliana]; contains Pfam
profile: PF00249 myb-like DNA-binding domain
Length = 374
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEE 60
KHGGFS + ++ + GS LPG +D IK+ WN L ++
Sbjct: 67 KHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116
>At5g48220.1 68418.m05957 indole-3-glycerol phosphate synthase,
putative similar to SP|P49572
Length = 379
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 231 DVKYLMKLCKNL-KGGLQEVADQLELRRV 258
D+KY++K+CK L L EV D+ E+ RV
Sbjct: 257 DIKYMIKICKILGMATLVEVHDEREMDRV 285
>At5g23000.1 68418.m02688 myb family transcription factor (MYB37)
contains PFAM profile: myb DNA binding domain PF00249;
Length = 329
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEE 60
KHG FS + ++ A+ GS LPG +D IK+ WN L ++
Sbjct: 67 KHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKK 116
>At5g02700.1 68418.m00208 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 456
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/75 (21%), Positives = 31/75 (41%)
Query: 80 FPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFN 139
+P R E T+ Y++L CN L+++ + + N KT W FN
Sbjct: 365 YPDQCWRSTCEVFPTSKEIYKMLGCNDATLKLVASFMDLVLRNAKTLERMVVWLGGIYFN 424
Query: 140 LQEDMYAQDSIDLLQ 154
+ ++ D+++
Sbjct: 425 GDAPWFEEELFDMVE 439
>At1g16490.1 68414.m01972 myb family transcription factor (MYB58)
contains PFAM profile: myb DNA binding domain PF00249
Length = 274
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNL 57
K G FSA ++ ++ SFG+ LPG +D IK+VW+ +L
Sbjct: 68 KRGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHL 114
>At4g37780.1 68417.m05347 myb family transcription factor (MYB87)
identical to AtMYB87 R2R3-MYB transcription factor
GI:2832559 from [Arabidopsis thaliana]; contains Pfam
profile: PF00249 myb-like DNA-binding domain
Length = 296
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 17 KHGGFSAAQKILMLMPSASFGS------ISLPGGSDCGIKDVWNHNLHEE 60
KHGGF+ + ++ + GS LPG +D IK+ WN L ++
Sbjct: 58 KHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKK 107
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,963,167
Number of Sequences: 28952
Number of extensions: 336752
Number of successful extensions: 764
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 22
length of query: 318
length of database: 12,070,560
effective HSP length: 81
effective length of query: 237
effective length of database: 9,725,448
effective search space: 2304931176
effective search space used: 2304931176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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