Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000930-TA|BGIBMGA000930-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal, IPR001005|Myb,
DNA-binding, IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR009057|Homeodomain-like, IPR000330|SNF2-related
         (1026 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    31   0.030
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   4.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 31.5 bits (68), Expect = 0.030
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 4/138 (2%)

Query: 421 GPPYTTDEHLVYNCGKLTILDKLLPKLQEQES-RVLIFSQMTRMLDILEDYCLWRQYKYC 479
           G   T  E   +   K     KL+  L++  + R LIF +  R  D L  +   +  +  
Sbjct: 378 GSACTDVEQKFFQVSKFDKRSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQST 437

Query: 480 RLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDL 539
            + G     +R + + ++   G  K   +++T     G+++     VI YD   +    +
Sbjct: 438 SIHGDRYQSEREKALLDFKT-GHRKV--LVATGVAARGLDIKDVQHVINYDLPKSIDEYV 494

Query: 540 QAMDRAHRIGQKKQVRVF 557
             + R  R+G K +   F
Sbjct: 495 HRIGRTGRVGNKGKATSF 512


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 816 NEKYGRDDIENIAKDVEGKTP 836
           +EKYG   +E +  D EG+ P
Sbjct: 201 DEKYGVPTLEELGFDTEGRLP 221


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,311
Number of Sequences: 317
Number of extensions: 8800
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 1026
length of database: 114,650
effective HSP length: 64
effective length of query: 962
effective length of database: 94,362
effective search space: 90776244
effective search space used: 90776244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)