GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000930-TA|BGIBMGA000930-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal, IPR001005|Myb,
DNA-binding, IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR009057|Homeodomain-like, IPR000330|SNF2-related
         (1026 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    27   2.5  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    27   2.5  
EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.       27   3.3  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   5.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   7.7  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   7.7  

>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 514 GGLGINLTSADVVIIYDSDWNPQMDLQAMDRA-HRIG 549
           G L   L   DV ++   D NP +DL  + RA H IG
Sbjct: 316 GELNDALKRMDVTVVRHPDGNPHLDLAILGRANHFIG 352


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 455 LIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAG 514
           L+F +  R  D L       Q+    + G     +R   + ++    S +   +++T   
Sbjct: 427 LVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFK---SGRMDVLIATSVA 483

Query: 515 GLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVF 557
             G+++ + + V+ YD   +    +  + R  R+G K +   F
Sbjct: 484 ARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSF 526


>EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.
          Length = 481

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 674 YREKQKVIPMGSWIEPPKRERKANYAVDAYFREALRVSEPKAPKVQAPR--PPKQPIVQD 731
           +R   ++ P   ++   ++E    Y    +   +LR   P   + Q PR  PPK P    
Sbjct: 49  FRNPSEIYPQPVYVPKSQQETIKTYEKIQFEDSSLRFPAPNQNEQQQPRPQPPKTPGAMQ 108

Query: 732 FQFFPPRLFELLDQE 746
           F +   ++  L  Q+
Sbjct: 109 FAWNMMKMMVLPRQD 123


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 837 EEVMEYSAVFWERCHELQDIDRI-MGQIERGEAKIQRRASIKKALDAKM 884
           ++ +E  A   +R  ELQD+ +    +IE  EAKI+     K  ++AK+
Sbjct: 400 KKTLEQIAAEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKL 448


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 837 EEVMEYSAVFWERCHELQDIDRIMGQIERGEAK 869
           E ++ Y+A  W    +LQ   R + Q++R  A+
Sbjct: 791 ESIIRYAAPVWSEATDLQWCQRKLAQVQRPLAR 823


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 822 DDIENIAKDVEGKTPEEVMEYSA 844
           DD+++ A D +  TPEE+ E +A
Sbjct: 423 DDVDSGASDFDRVTPEELQEIAA 445


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 940,362
Number of Sequences: 2123
Number of extensions: 39020
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 8
length of query: 1026
length of database: 516,269
effective HSP length: 71
effective length of query: 955
effective length of database: 365,536
effective search space: 349086880
effective search space used: 349086880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)