Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000930-TA|BGIBMGA000930-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR001650|Helicase, C-terminal, IPR001005|Myb,
DNA-binding, IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR009057|Homeodomain-like, IPR000330|SNF2-related
(1026 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 936 0.0
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 936 0.0
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 933 0.0
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 478 e-134
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 470 e-132
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 446 e-125
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 431 e-120
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 431 e-120
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 430 e-120
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 368 e-102
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 366 e-101
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 362 e-100
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 359 7e-99
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 347 2e-95
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 338 1e-92
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 337 2e-92
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 251 2e-66
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 238 2e-62
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 215 1e-55
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 214 3e-55
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 195 1e-49
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 171 3e-42
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 141 2e-33
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 130 5e-30
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 118 2e-26
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 107 4e-23
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 107 5e-23
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 103 8e-22
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 101 3e-21
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 100 6e-21
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 96 9e-20
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 95 2e-19
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 91 5e-18
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 90 8e-18
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 88 3e-17
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 87 6e-17
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 79 2e-14
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 79 2e-14
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 71 3e-12
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 71 4e-12
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 71 4e-12
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica... 68 4e-11
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 67 6e-11
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 64 5e-10
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 64 6e-10
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 63 1e-09
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 58 3e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 39 0.020
At3g32330.1 68416.m04125 DNA repair protein-related weak similar... 37 0.060
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 37 0.060
At2g38090.1 68415.m04676 myb family transcription factor contain... 37 0.079
At5g05790.1 68418.m00637 myb family transcription factor contain... 36 0.10
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 36 0.10
At3g11280.2 68416.m01372 myb family transcription factor contain... 36 0.14
At3g11280.1 68416.m01371 myb family transcription factor contain... 36 0.14
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta... 35 0.24
At3g32280.1 68416.m04116 hypothetical protein 35 0.32
At5g01200.1 68418.m00025 myb family transcription factor contain... 34 0.56
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 34 0.56
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 33 0.74
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 33 0.98
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 33 0.98
At3g31900.1 68416.m04029 hypothetical protein 33 0.98
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 33 1.3
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 32 1.7
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 32 1.7
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 32 1.7
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 32 1.7
At5g58900.1 68418.m07379 myb family transcription factor contain... 32 2.3
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 32 2.3
At5g06160.1 68418.m00687 splicing factor-related contains some s... 31 3.9
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 31 3.9
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 3.9
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 31 5.2
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 31 5.2
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 31 5.2
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 31 5.2
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 5.2
At5g08520.1 68418.m01011 myb family transcription factor contain... 30 6.9
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 30 6.9
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 30 6.9
At2g34210.1 68415.m04186 KOW domain-containing transcription fac... 30 6.9
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 30 6.9
At4g40020.1 68417.m05666 hypothetical protein 30 9.1
At1g49010.1 68414.m05495 myb family transcription factor contain... 30 9.1
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 936 bits (2317), Expect = 0.0
Identities = 459/842 (54%), Positives = 593/842 (70%), Gaps = 27/842 (3%)
Query: 130 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVP 189
G++RDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLL Y+ ++ + GPH+V+ P
Sbjct: 192 GKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAP 251
Query: 190 KSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIREKSVF 249
KSTL NWMNE +++CP L+AV +G+ E R E L+ G +D+C+TS+EM I+EK+
Sbjct: 252 KSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTL 311
Query: 250 KKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPD 309
++F+WRY++IDEAHRIKNE S LS+ +R F + RLL+TGTPLQNNLHELWALLNFLLP+
Sbjct: 312 RRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPE 371
Query: 310 VFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXXXXXXXXXGLS 369
VF+S++ FD WF + ++V +LH VLRPFLLRR G+S
Sbjct: 372 VFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMS 431
Query: 370 KMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEH 429
+MQ+++Y +L KD++VVNG G E+ RL NI MQLRKCCNHPYLF GAEPGPPYTT +H
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDH 489
Query: 430 LVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHED 489
LV N GK+ +LDKLLPKL++++SRVLIFSQMTR+LDILEDY ++R Y+YCR+DG T ++
Sbjct: 490 LVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDE 549
Query: 490 RNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIG 549
R+ IE YN GSEKFVF+LSTRAGGLGINL +ADVVI+YDSDWNPQ+DLQA DRAHRIG
Sbjct: 550 RDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIG 609
Query: 550 QKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMIRHGA 609
QKK+V+VFR T+N +E K++ERA KL LD LVIQ GRL + K +NKDE+L M+R+GA
Sbjct: 610 QKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKT-VNKDELLQMVRYGA 668
Query: 610 NHVFASKDSEVTDEDIDTILAKGESKTEELKQKLESLGESSLRAFSMDTPGATTDSVYQF 669
VF+SKDS +TDEDID I+AKGE T EL K++ E +++ F MD + Y F
Sbjct: 669 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIQ-FKMD----DSADFYDF 723
Query: 670 EGEDYREKQ---KVIPMGSWIEPPKRERKANYAVDAYFREALRVSEPKAPKVQAPRPPKQ 726
+ ++ E + K I +W +PPKRERK NY+ YF++ LR P PK PR P+
Sbjct: 724 DDDNKDESKVDFKKIVSENWNDPPKRERKRNYSEVEYFKQTLRQGAPAKPK--EPRIPRM 781
Query: 727 PIVQDFQFFP-PRLFELLDQEIYHYRKTLGYKVPRNPELGPDAAKIQREEQRKIDXXXXX 785
P + DFQFF RL EL ++E+ Y K D ++ E +
Sbjct: 782 PQLHDFQFFNIQRLTELYEKEV-RYLMQAHQKTQMK-----DTIEVDEPE----EVGDPL 831
Query: 786 XXXXXXXXXXXXXXGFTNWTKRDFNQFIKANEKYGRDDIENIAKDVEGKTPEEVMEYSAV 845
GF+ W++RDFN FI+A EKYGR+DI++IA ++EGKT EEV Y+ V
Sbjct: 832 TAEEVEEKELLLEEGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAQV 891
Query: 846 FWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKMARYRAPFHQLRISYGTNKGKN 905
F R EL D DRI+ IERGEA+I R+ I KA+ K+ RYR P+ +L+I YG NKGK
Sbjct: 892 FQVRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKL 951
Query: 906 YVEEEDRFLVCMLHKLGFDKENVYEELRAAVHSAPQFRFDWFLKSRTAVELQRRCNTLIT 965
Y EE DRF++CM+HKLG+ ++EL+AA ++P FRFDWF+KSRT EL RRC+TLI
Sbjct: 952 YNEECDRFMICMVHKLGYGN---WDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIR 1008
Query: 966 LI 967
LI
Sbjct: 1009 LI 1010
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 936 bits (2317), Expect = 0.0
Identities = 459/842 (54%), Positives = 593/842 (70%), Gaps = 27/842 (3%)
Query: 130 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVP 189
G++RDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLL Y+ ++ + GPH+V+ P
Sbjct: 192 GKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAP 251
Query: 190 KSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIREKSVF 249
KSTL NWMNE +++CP L+AV +G+ E R E L+ G +D+C+TS+EM I+EK+
Sbjct: 252 KSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTL 311
Query: 250 KKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPD 309
++F+WRY++IDEAHRIKNE S LS+ +R F + RLL+TGTPLQNNLHELWALLNFLLP+
Sbjct: 312 RRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPE 371
Query: 310 VFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXXXXXXXXXGLS 369
VF+S++ FD WF + ++V +LH VLRPFLLRR G+S
Sbjct: 372 VFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMS 431
Query: 370 KMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLFDGAEPGPPYTTDEH 429
+MQ+++Y +L KD++VVNG G E+ RL NI MQLRKCCNHPYLF GAEPGPPYTT +H
Sbjct: 432 QMQKQYYKALLQKDLEVVNGGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDH 489
Query: 430 LVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHED 489
LV N GK+ +LDKLLPKL++++SRVLIFSQMTR+LDILEDY ++R Y+YCR+DG T ++
Sbjct: 490 LVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDE 549
Query: 490 RNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIG 549
R+ IE YN GSEKFVF+LSTRAGGLGINL +ADVVI+YDSDWNPQ+DLQA DRAHRIG
Sbjct: 550 RDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIG 609
Query: 550 QKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMIRHGA 609
QKK+V+VFR T+N +E K++ERA KL LD LVIQ GRL + K +NKDE+L M+R+GA
Sbjct: 610 QKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKT-VNKDELLQMVRYGA 668
Query: 610 NHVFASKDSEVTDEDIDTILAKGESKTEELKQKLESLGESSLRAFSMDTPGATTDSVYQF 669
VF+SKDS +TDEDID I+AKGE T EL K++ E +++ F MD + Y F
Sbjct: 669 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIQ-FKMD----DSADFYDF 723
Query: 670 EGEDYREKQ---KVIPMGSWIEPPKRERKANYAVDAYFREALRVSEPKAPKVQAPRPPKQ 726
+ ++ E + K I +W +PPKRERK NY+ YF++ LR P PK PR P+
Sbjct: 724 DDDNKDESKVDFKKIVSENWNDPPKRERKRNYSEVEYFKQTLRQGAPAKPK--EPRIPRM 781
Query: 727 PIVQDFQFFP-PRLFELLDQEIYHYRKTLGYKVPRNPELGPDAAKIQREEQRKIDXXXXX 785
P + DFQFF RL EL ++E+ Y K D ++ E +
Sbjct: 782 PQLHDFQFFNIQRLTELYEKEV-RYLMQAHQKTQMK-----DTIEVDEPE----EVGDPL 831
Query: 786 XXXXXXXXXXXXXXGFTNWTKRDFNQFIKANEKYGRDDIENIAKDVEGKTPEEVMEYSAV 845
GF+ W++RDFN FI+A EKYGR+DI++IA ++EGKT EEV Y+ V
Sbjct: 832 TAEEVEEKELLLEEGFSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAQV 891
Query: 846 FWERCHELQDIDRIMGQIERGEAKIQRRASIKKALDAKMARYRAPFHQLRISYGTNKGKN 905
F R EL D DRI+ IERGEA+I R+ I KA+ K+ RYR P+ +L+I YG NKGK
Sbjct: 892 FQVRYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKL 951
Query: 906 YVEEEDRFLVCMLHKLGFDKENVYEELRAAVHSAPQFRFDWFLKSRTAVELQRRCNTLIT 965
Y EE DRF++CM+HKLG+ ++EL+AA ++P FRFDWF+KSRT EL RRC+TLI
Sbjct: 952 YNEECDRFMICMVHKLGYGN---WDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIR 1008
Query: 966 LI 967
LI
Sbjct: 1009 LI 1010
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 933 bits (2309), Expect = 0.0
Identities = 470/927 (50%), Positives = 618/927 (66%), Gaps = 43/927 (4%)
Query: 45 RFDFLLKQTEIFSHFMTNTXXXXXXXXXXXXXXXXXXXXDTEPEGPGDHRHRKTXXXXXX 104
R +LL+QTE+F+HF + + E D + K
Sbjct: 117 RLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEE-----DEEYLKEEEDGLT 171
Query: 105 XXXXXTNSKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKT 164
R P I+ G+MRDYQ+ GLNW+I LYENGINGILADEMGLGKT
Sbjct: 172 GSGNT---------RLLTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKT 221
Query: 165 LQTISLLGYMKHFKNVPGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIR 224
LQTISLL Y+ ++ + GPH+V+ PKSTL NWMNE +++CP L+AV +G+ E R
Sbjct: 222 LQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 281
Query: 225 ETLMPGNWDVCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNR 284
+ L+ G +D+C+TS+EM I+EK+ ++F+WRY++IDEAHRIKNE S LS+ +R F + R
Sbjct: 282 DLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYR 341
Query: 285 LLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFL 344
LL+TGTPLQNNLHELWALLNFLLP++F+S++ FD WF + ++V +LH VLRPFL
Sbjct: 342 LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFL 401
Query: 345 LRRXXXXXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQ 404
LRR G+S+MQ+++Y +L KD++ VN G E+ RL NI MQ
Sbjct: 402 LRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGG--ERKRLLNIAMQ 459
Query: 405 LRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRML 464
LRKCCNHPYLF GAEPGPPYTT +HL+ N GK+ +LDKLLPKL+E++SRVLIFSQMTR+L
Sbjct: 460 LRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLL 519
Query: 465 DILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSAD 524
DILEDY ++R Y YCR+DG T ++R+ IE YN GSEKFVF+LSTRAGGLGINL +AD
Sbjct: 520 DILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATAD 579
Query: 525 VVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVI 584
VVI+YDSDWNPQ+DLQA DRAHRIGQKK+V+VFR T++ +EEK++ERA KL LD LVI
Sbjct: 580 VVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVI 639
Query: 585 QSGRLVDTKNQLNKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKGESKTEELKQKLE 644
Q GRL + K +NKDE+L M+R+GA VF+SKDS +TDEDID I+AKGE T EL K++
Sbjct: 640 QQGRLAEQKT-VNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMK 698
Query: 645 SLGESSLRAFSMDTPGATTDSVYQFEGEDYREKQ---KVIPMGSWIEPPKRERKANYAVD 701
E +++ F MD + Y F+ ++ E + K I +W +PPKRERK NY+
Sbjct: 699 KFTEDAIQ-FKMD----DSADFYDFDDDNKDENKLDFKKIVSDNWNDPPKRERKRNYSES 753
Query: 702 AYFREALRVSEPKAPKVQAPRPPKQPIVQDFQFFP-PRLFELLDQEIYHYRKTLGYKVPR 760
YF++ LR P PK PR P+ P + DFQFF RL EL ++E+ + +T +
Sbjct: 754 EYFKQTLRQGAPAKPK--EPRIPRMPQLHDFQFFNIQRLTELYEKEVRYLMQT-----HQ 806
Query: 761 NPELGPDAAKIQREEQRKIDXXXXXXXXXXXXXXXXXXXGFTNWTKRDFNQFIKANEKYG 820
+L D ++ E GF+ W++RDFN F++A EKYG
Sbjct: 807 KNQL-KDTIDVEEPE-----GGDPLTTEEVEEKEGLLEEGFSTWSRRDFNTFLRACEKYG 860
Query: 821 RDDIENIAKDVEGKTPEEVMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIKKAL 880
R+DI++IA ++EGKT EEV Y+ VF ER EL D DRI+ IERGEA+I R+ I KA+
Sbjct: 861 RNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAI 920
Query: 881 DAKMARYRAPFHQLRISYGTNKGKNYVEEEDRFLVCMLHKLGFDKENVYEELRAAVHSAP 940
K+ RYR P+ +L+I YG NKGK Y EE DRF++CM+HKLG+ ++EL+AA ++
Sbjct: 921 GKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGN---WDELKAAFRTSS 977
Query: 941 QFRFDWFLKSRTAVELQRRCNTLITLI 967
FRFDWF+KSRT+ EL RRC+TLI LI
Sbjct: 978 VFRFDWFVKSRTSQELARRCDTLIRLI 1004
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 478 bits (1178), Expect = e-134
Identities = 242/524 (46%), Positives = 337/524 (64%), Gaps = 19/524 (3%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P ++ GE+R YQ+ GL WM+SL+ N +NGILADEMGLGKT+QTISL+ Y+ K VPGP
Sbjct: 425 PSLLEGGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPGP 484
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
++++ PK+ L NW+NEF W PS+ A G E R + G ++V IT Y++I+
Sbjct: 485 YLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREKIAGEGKFNVLITHYDLIM 544
Query: 244 REKSVFKKFNWRYMVIDEAHRIKNEKSKLSE-LLREFKSMNRLLLTGTPLQNNLHELWAL 302
R+K+ KK W YM++DE HR+KN +S L++ LL ++ RLLLTGTP+QN+L ELW+L
Sbjct: 545 RDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSL 604
Query: 303 LNFLLPDVFNSSDDFDSWFNT------NAALGDNQ---LVSRLHAVLRPFLLRRXXXXXX 353
LNFLLP +FNS +F+ WFN N +L D + ++ RLH V+RPF+LRR
Sbjct: 605 LNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIHRLHHVIRPFILRRKKDEVE 664
Query: 354 XXXXXXXXXXXXXGLSKMQREWYTKVL-MKDIDVVNGAGKVEKMRLQNILMQLRKCCNHP 412
+S Q+ +Y +V M + + G+GK + LQN+ MQLRKCCNHP
Sbjct: 665 KFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKSKS--LQNLTMQLRKCCNHP 722
Query: 413 YLFDGAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCL 472
YLF G + +V GK +LD+LLPKL++ R+L+FSQMTR++D+LE Y
Sbjct: 723 YLFVGGDYN--MWKKPEIVRASGKFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLT 780
Query: 473 WRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSD 532
YKY RLDG T + R ++++N S F+F+LSTRAGGLG+NL +AD VII+DSD
Sbjct: 781 LNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSD 840
Query: 533 WNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDT 592
WNPQMD QA DRAHRIGQKK+VRVF L++ +VEE I+ERA+ K+ +D VIQ+G T
Sbjct: 841 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTT 900
Query: 593 KNQLNKDEML-NMIRHGANHVFASKDSEVTDEDIDTILAKGESK 635
++ EML ++R G + + SE +I+ + A+ E +
Sbjct: 901 STAQDRREMLEEIMRKGTSSLGTDVPSE---REINRLAARSEDE 941
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 470 bits (1159), Expect = e-132
Identities = 235/493 (47%), Positives = 326/493 (66%), Gaps = 16/493 (3%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P ++ GE+R YQ+ GL WM+SLY N NGILADEMGLGKT+QTI+L+ Y+ K++ GP
Sbjct: 378 PSLLQGGELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGP 437
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
H+++ PK+ L NW NEF W PS+ A G +E R T IR + G ++V IT Y++I+
Sbjct: 438 HLILAPKAVLPNWENEFALWAPSISAFLYDGSKEKR-TEIRARIAGGKFNVLITHYDLIM 496
Query: 244 REKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLRE-FKSMNRLLLTGTPLQNNLHELWAL 302
R+K+ KK +W YM++DE HR+KN + L++ L ++ RLLLTGTP+QN+L ELW+L
Sbjct: 497 RDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSL 556
Query: 303 LNFLLPDVFNSSDDFDSWFNT------NAALGDNQ---LVSRLHAVLRPFLLRRXXXXXX 353
LNFLLP +FNS +F+ WFNT +A+L D + +++RLH V+RPFLLRR
Sbjct: 557 LNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEVE 616
Query: 354 XXXXXXXXXXXXXGLSKMQREWYTKVL-MKDIDVVNGAGKVEKMRLQNILMQLRKCCNHP 412
+S Q+ +Y +V + + + +G GK + LQN+ MQLRKCCNHP
Sbjct: 617 KFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKS--LQNLTMQLRKCCNHP 674
Query: 413 YLFDGAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCL 472
YLF GA+ +V GK +LD+LLPKL++ R+L+FSQMTR++D+LE Y
Sbjct: 675 YLFVGADYN--MCKKPEIVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLS 732
Query: 473 WRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSD 532
Y Y RLDG T + R ++++N S F+F+LSTRAGGLG+NL +AD +II+DSD
Sbjct: 733 LNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSD 792
Query: 533 WNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDT 592
WNPQMD QA DRAHRIGQKK+VRVF L++ ++EE I+ERA+ K+ +D VIQ+G T
Sbjct: 793 WNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTT 852
Query: 593 KNQLNKDEMLNMI 605
++ EML I
Sbjct: 853 STAQDRREMLEEI 865
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 446 bits (1098), Expect = e-125
Identities = 227/550 (41%), Positives = 355/550 (64%), Gaps = 25/550 (4%)
Query: 119 RFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFK 178
+ + P ++ G +RDYQ+ GLN++++ + N N ILADEMGLGKT+Q++S+LG++++ +
Sbjct: 612 KLDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQ 671
Query: 179 NVPGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIG---DQETRNTF--IRETLMPGNWD 233
+PGP +V+VP STL NW EF+KW P + + +G +E RN + + P ++
Sbjct: 672 QIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVRNKTNDVHKVGRPIKFN 731
Query: 234 VCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQ 293
+T+YE+++++K+V K W Y+++DEAHR+KN +++L L EF + N+LL+TGTPLQ
Sbjct: 732 ALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQ 791
Query: 294 NNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXX 353
N++ ELWALL+FL P F + D+F + ++ +++L + LH LRP +LRR
Sbjct: 792 NSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFNESELAN-LHLELRPHILRRVIKDVE 850
Query: 354 XXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPY 413
+S +Q+++Y +L ++ +N + ++ L NI+++L+KCCNHP+
Sbjct: 851 KSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPF 910
Query: 414 LFDGAEPGPPYTTDEH-----LVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILE 468
LF+ A+ G +++ ++ + GKL ILDKLL +L+E + RVLIFSQM RMLDIL
Sbjct: 911 LFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILA 970
Query: 469 DYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVII 528
+Y R +++ RLDG T E R + ++ +N S+ F F+LSTRAGGLGINL +AD V+I
Sbjct: 971 EYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVI 1030
Query: 529 YDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQ--- 585
+DSDWNPQ DLQAM RAHRIGQ++ V ++R +T +VEE+I+ERA+ K+ LD LVIQ
Sbjct: 1031 FDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLN 1090
Query: 586 -SGRLV--DTK--NQLNKDEMLNMIRHGANHVF-ASKDSEVTDE-----DIDTILAKGES 634
GRL +TK + +K+E+ ++R GA +F K+ E + + DID IL + E
Sbjct: 1091 AEGRLEKRETKKGSNFDKNELSAILRFGAEELFKEDKNDEESKKRLLSMDIDEILERAEQ 1150
Query: 635 KTEELKQKLE 644
E+ + E
Sbjct: 1151 VEEKHTDETE 1160
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 431 bits (1062), Expect = e-120
Identities = 231/564 (40%), Positives = 334/564 (59%), Gaps = 30/564 (5%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P + G++R+YQ+ GL W++SLY N +NGILADEMGLGKT+Q ISL+ Y+ KN GP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
+V+VP S L W +E W PS+ + G + R +E ++ ++V +T+YE ++
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 244 R--EKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWA 301
++ K +W Y++IDE HRIKN KL+ L+ + S +RLLLTGTPLQNNL ELWA
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 302 LLNFLLPDVFNSSDDFDSWFNT-----------NAALGDNQ---LVSRLHAVLRPFLLRR 347
LLNFLLP++FNSS+DF WFN A L + + +++RLH VLRPF+LRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 348 XXXXXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDI-DVVNGAGKVEKMRLQNILMQLR 406
L + + Y K+LMK + D + G + + N +M+LR
Sbjct: 986 LKHKVENELPEKIER-----LIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELR 1040
Query: 407 KCCNHPYLFDGAEPGPPYTTDEH----LVYNCGKLTILDKLLPKLQEQESRVLIFSQMTR 462
CNHPYL +H +V CGKL +LD++LPKL+ + RVL FS MTR
Sbjct: 1041 NICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTR 1100
Query: 463 MLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTS 522
+LD++EDY + YKY RLDGQT DR I+ +N GS F+F+LS RAGG+G+NL +
Sbjct: 1101 LLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA 1160
Query: 523 ADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKL 582
AD VI++D+DWNPQ+DLQA RAHRIGQKK V V R T N+VEE++ AE KL +
Sbjct: 1161 ADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQ 1220
Query: 583 VIQSGRLVDTKNQLNKDEMLNMIRHGANHVFASKDSEVTDED-IDTILAKGESKTEELKQ 641
I +G + + ++ E L + + +D+ V D+D ++ ++A+ ES+ + +
Sbjct: 1221 SITAGFFDNNTSAEDRKEYLESLLRESK---KEEDAPVLDDDALNDLIARRESEIDIFES 1277
Query: 642 KLESLGESSLRAFSMDTPGATTDS 665
+ E+ + ++ G +DS
Sbjct: 1278 IDKQRKENEMETWNTLVHGPGSDS 1301
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 431 bits (1062), Expect = e-120
Identities = 231/564 (40%), Positives = 334/564 (59%), Gaps = 30/564 (5%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P + G++R+YQ+ GL W++SLY N +NGILADEMGLGKT+Q ISL+ Y+ KN GP
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
+V+VP S L W +E W PS+ + G + R +E ++ ++V +T+YE ++
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLM 865
Query: 244 R--EKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWA 301
++ K +W Y++IDE HRIKN KL+ L+ + S +RLLLTGTPLQNNL ELWA
Sbjct: 866 NKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWA 925
Query: 302 LLNFLLPDVFNSSDDFDSWFNT-----------NAALGDNQ---LVSRLHAVLRPFLLRR 347
LLNFLLP++FNSS+DF WFN A L + + +++RLH VLRPF+LRR
Sbjct: 926 LLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRR 985
Query: 348 XXXXXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDI-DVVNGAGKVEKMRLQNILMQLR 406
L + + Y K+LMK + D + G + + N +M+LR
Sbjct: 986 LKHKVENELPEKIER-----LIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELR 1040
Query: 407 KCCNHPYLFDGAEPGPPYTTDEH----LVYNCGKLTILDKLLPKLQEQESRVLIFSQMTR 462
CNHPYL +H +V CGKL +LD++LPKL+ + RVL FS MTR
Sbjct: 1041 NICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTR 1100
Query: 463 MLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTS 522
+LD++EDY + YKY RLDGQT DR I+ +N GS F+F+LS RAGG+G+NL +
Sbjct: 1101 LLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA 1160
Query: 523 ADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKL 582
AD VI++D+DWNPQ+DLQA RAHRIGQKK V V R T N+VEE++ AE KL +
Sbjct: 1161 ADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQ 1220
Query: 583 VIQSGRLVDTKNQLNKDEMLNMIRHGANHVFASKDSEVTDED-IDTILAKGESKTEELKQ 641
I +G + + ++ E L + + +D+ V D+D ++ ++A+ ES+ + +
Sbjct: 1221 SITAGFFDNNTSAEDRKEYLESLLRESK---KEEDAPVLDDDALNDLIARRESEIDIFES 1277
Query: 642 KLESLGESSLRAFSMDTPGATTDS 665
+ E+ + ++ G +DS
Sbjct: 1278 IDKQRKENEMETWNTLVHGPGSDS 1301
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 430 bits (1059), Expect = e-120
Identities = 218/531 (41%), Positives = 334/531 (62%), Gaps = 25/531 (4%)
Query: 127 IKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGPHIV 186
+ G+++ YQ++G+ W+ISL++NG+NGILAD+MGLGKT+QTI L ++K + GP++V
Sbjct: 197 LTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKG-NGLDGPYLV 255
Query: 187 IVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETL---MPGNWDVCITSYEMII 243
I P STL+NW NE ++ PS+ A+ GD+ R+ R+ + + + + ITSYE+ +
Sbjct: 256 IAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAM 315
Query: 244 RE-KSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWAL 302
+ K + + + W+Y+VIDE HR+KN K KL L+ K N+LLLTGTPLQNNL ELW+L
Sbjct: 316 NDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSL 375
Query: 303 LNFLLPDVFNSSDDFDSWF-----NTNAALGDN------QLVSRLHAVLRPFLLRRXXXX 351
LNF+LPD+F S D+F+SWF N N A + Q+VS+LH +LRPF+LRR
Sbjct: 376 LNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCD 435
Query: 352 XXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVE----KMRLQNILMQLRK 407
++ Q+++ ++ ++ G + K +L N+++QLRK
Sbjct: 436 VELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVIQLRK 495
Query: 408 CCNHPYLFDGAEPGPP-YTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDI 466
CNHP L G G Y E +V CGK +L++LL +L +VLIFSQ T++LDI
Sbjct: 496 NCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDI 555
Query: 467 LEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVV 526
++ Y + ++ CR+DG ++R RQI++++ E S +F+LSTRAGGLGINLT+AD
Sbjct: 556 MDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTC 615
Query: 527 IIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQS 586
I+YDSDWNPQMDLQAMDR HRIGQ K V V+RL T ++E ++++RA KL+L+ +VI
Sbjct: 616 ILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQ 675
Query: 587 GRL----VDTKNQLNKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKGE 633
G+ + L ++++L +++ ++++D D+D +L + +
Sbjct: 676 GQFHQERAKSSTPLEEEDILALLKEDETAEDKLIQTDISDADLDRLLDRSD 726
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 368 bits (906), Expect = e-102
Identities = 197/468 (42%), Positives = 285/468 (60%), Gaps = 16/468 (3%)
Query: 132 MRDYQVRGLNWMISLYENGINGILA-DEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVPK 190
++ +QV G++W+I Y G+N +L D+MGLGKTLQ IS L Y+K + +PGP +V+ P
Sbjct: 51 LKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPL 110
Query: 191 STLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNW---DVCITSYEMIIREKS 247
S W++E ++ P+L+ + +GD+ R + G++ DV +T+Y++ + ++
Sbjct: 111 SVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDIALVDQD 170
Query: 248 VFKKFNWRYMVIDEAHRIKNEKSKL-SELLREFKSMNRLLLTGTPLQNNLHELWALLNFL 306
+ W+Y +IDEA R+KN S L + LL +F RLL+TGTP+QNNL ELWAL++F
Sbjct: 171 FLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFC 230
Query: 307 LPDVFNSSDDFDSWFN-TNAAL---GDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXX--- 359
+P VF + D F S F T L D + L +L F+LRR
Sbjct: 231 MPLVFGTLDQFLSAFKETGDGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPP 290
Query: 360 -XXXXXXXGLSKMQREWYTKVLMKDID--VVNGAGKVEKMRLQNILMQLRKCCNHPYLFD 416
L +Q++ YT +L K++ + +G LQNI++QLRK C+HPYLF
Sbjct: 291 LTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFP 350
Query: 417 GAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQY 476
G EP P+ EHLV GKL +LD+LL +L + RVL+FSQMT LDIL+D+ R+Y
Sbjct: 351 GIEP-EPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRY 409
Query: 477 KYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQ 536
Y RLDG E+R I+ ++++GS FVFM+STRAGG+G+NL +AD VI Y+ DWNPQ
Sbjct: 410 SYERLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQ 469
Query: 537 MDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVI 584
+D QA+ RAHRIGQ V L+T+++VEE I+ RAE KL+L V+
Sbjct: 470 VDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVV 517
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 366 bits (900), Expect = e-101
Identities = 204/518 (39%), Positives = 300/518 (57%), Gaps = 29/518 (5%)
Query: 111 NSKQKTIFR-FEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 169
N + + F+ F+ +P ++ G + YQ+ GLN++ + N ILADEMGLGKT+Q+I+
Sbjct: 204 NERNREEFKQFDLTPEFL-TGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIA 262
Query: 170 LLGYMKHFKNVPGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNT-----FIR 224
L + F+ PH+V+ P ST+ NW EF W P + V GD E R+ F
Sbjct: 263 FLASL--FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYF 320
Query: 225 ETLMPGNWDVCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNR 284
+DV +T+YEM+ SV W M+IDE HR+KN+KSKL L +F S +
Sbjct: 321 SEGRKSKFDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHI 380
Query: 285 LLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFL 344
+LLTGTPLQNNL+EL+AL++FL D F S + F + + +SRLH +L P L
Sbjct: 381 VLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQD-------INKEEQISRLHQMLAPHL 433
Query: 345 LRRXXXXXXXXXXX-XXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILM 403
LRR +S Q+E Y V+ + V+ K ++ N+LM
Sbjct: 434 LRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLT---KKRDAKISNVLM 490
Query: 404 QLRKCCNHPYLFDGAEPGPPYTTDEH--LVYNCGKLTILDKLLPKLQEQESRVLIFSQMT 461
+LR+ C+HPYL EP + L+ GKL +LDK++ KL+EQ RVLI++Q
Sbjct: 491 KLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQ 550
Query: 462 RMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLT 521
L +LEDY ++ + Y R+DG+ +R +I+ +N E S +F F+LSTRAGG+GINL
Sbjct: 551 HTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLA 610
Query: 522 SADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDK 581
+AD VIIYDSDWNP DLQAM R HR+GQ +V ++RLI TVEE+++E + K+ L+
Sbjct: 611 TADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEH 670
Query: 582 LVIQSGRLVDTKNQLNKDEMLNMIRHGANHVFASKDSE 619
LV+ K L +DE+ ++I++G+ +F+ ++ E
Sbjct: 671 LVV-------GKQHLCQDELDDIIKYGSKELFSEENDE 701
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 362 bits (891), Expect = e-100
Identities = 210/554 (37%), Positives = 309/554 (55%), Gaps = 46/554 (8%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P ++ G +RDYQ+ GL WM+SLY N +NGILADEMGLGKT+Q ++L+ Y+ FK GP
Sbjct: 973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1032
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
H++IVP + L NW +E W PS+ + +G ++ R+ + + ++V +T+YE I+
Sbjct: 1033 HLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIM 1092
Query: 244 REKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALL 303
++S K +W+Y++IDEA R+K+ +S L+ L ++ RLLLTGTPLQN+L ELW+LL
Sbjct: 1093 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL 1152
Query: 304 NFLLPDVFNSSDDFDSWF-------NTNAALGDNQL--------VSRLHAVLRPFLLRRX 348
N LLPDVF++ F WF + D+ L + RLH +L PF+LRR
Sbjct: 1153 NLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRR 1212
Query: 349 XXXXXXXXXXXXXXXXXXGLSKMQR---EWYTKVLMKDIDVVNGAGKVEK---------M 396
+S +Q +W +D + + +K
Sbjct: 1213 VEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYR 1272
Query: 397 RLQNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHLVYNCGKLTILDKLLPKLQEQESR 453
L N M+LRK CNHP L PY D + LV +CGKL ILD++L KLQ R
Sbjct: 1273 TLNNRCMELRKACNHPLL------NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHR 1326
Query: 454 VLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRA 513
VL+FS MT++LDILE+Y WR+ Y R+DG T EDR I ++N ++ F+F+LS RA
Sbjct: 1327 VLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRA 1386
Query: 514 GGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERA 573
G G+NL +AD V+IYD D NP+ + QA+ RAHRIGQ ++V+V + E +VE+
Sbjct: 1387 AGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM-------EAVVEKL 1439
Query: 574 EVKLRLDKLVIQSGRLVDTKNQL-NKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKG 632
+ D+L +SG VD ++ + KD + I + ++ DE I+
Sbjct: 1440 SSHQKEDEL--RSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1497
Query: 633 ESKTEELKQKLESL 646
+ EE + LE+L
Sbjct: 1498 RTTHEERRMTLETL 1511
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 359 bits (882), Expect = 7e-99
Identities = 210/554 (37%), Positives = 308/554 (55%), Gaps = 47/554 (8%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P ++ G +RDYQ+ GL WM+SLY N +NGILADEMGLGKT+Q ++L+ Y+ FK GP
Sbjct: 973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1032
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
H++IVP + L NW +E W PS+ + +G ++ R+ + ++V +T+YE I+
Sbjct: 1033 HLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKFE-KFNVLVTTYEFIM 1091
Query: 244 REKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALL 303
++S K +W+Y++IDEA R+K+ +S L+ L ++ RLLLTGTPLQN+L ELW+LL
Sbjct: 1092 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL 1151
Query: 304 NFLLPDVFNSSDDFDSWF-------NTNAALGDNQL--------VSRLHAVLRPFLLRRX 348
N LLPDVF++ F WF + D+ L + RLH +L PF+LRR
Sbjct: 1152 NLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRR 1211
Query: 349 XXXXXXXXXXXXXXXXXXGLSKMQR---EWYTKVLMKDIDVVNGAGKVEK---------M 396
+S +Q +W +D + + +K
Sbjct: 1212 VEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYR 1271
Query: 397 RLQNILMQLRKCCNHPYLFDGAEPGPPYTTD---EHLVYNCGKLTILDKLLPKLQEQESR 453
L N M+LRK CNHP L PY D + LV +CGKL ILD++L KLQ R
Sbjct: 1272 TLNNRCMELRKACNHPLL------NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHR 1325
Query: 454 VLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRA 513
VL+FS MT++LDILE+Y WR+ Y R+DG T EDR I ++N ++ F+F+LS RA
Sbjct: 1326 VLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRA 1385
Query: 514 GGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERA 573
G G+NL +AD V+IYD D NP+ + QA+ RAHRIGQ ++V+V + E +VE+
Sbjct: 1386 AGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM-------EAVVEKL 1438
Query: 574 EVKLRLDKLVIQSGRLVDTKNQL-NKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKG 632
+ D+L +SG VD ++ + KD + I + ++ DE I+
Sbjct: 1439 SSHQKEDEL--RSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1496
Query: 633 ESKTEELKQKLESL 646
+ EE + LE+L
Sbjct: 1497 RTTHEERRMTLETL 1510
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 347 bits (853), Expect = 2e-95
Identities = 197/487 (40%), Positives = 285/487 (58%), Gaps = 35/487 (7%)
Query: 132 MRDYQVRGLNWMISLYENGINGILA-DEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVPK 190
++ +QV G++W+I Y G+N +L D+MGLGKTLQ IS L Y+K + +PGP +V+ P
Sbjct: 51 LKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPL 110
Query: 191 STLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETL------MPGNW---DVCITSYEM 241
S W++E ++ P+L+ + +GD+ R + G++ DV +T+Y++
Sbjct: 111 SVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDI 170
Query: 242 IIREKSVFKKFNWRYMVIDEAHRIKNEKSKL-SELLREFKSMNRLLLTGTPLQNNLHELW 300
+ ++ + W+Y +IDEA R+KN S L + LL +F RLL+TGTP+QNNL ELW
Sbjct: 171 ALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELW 230
Query: 301 ALLNFLLPDVFNSSDDFDSWFN-TNAALG------DNQLVSRLHAVLRPFLLRRXXXXXX 353
AL++F +P VF + D F S F T L D + L +L F+LRR
Sbjct: 231 ALMHFCMPLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLI 290
Query: 354 XXXXXX----XXXXXXXGLSKMQREWYTKVLMKDID--VVNGAGKVEKMRLQNILMQLRK 407
L +Q++ YT +L K++ + +G LQNI++QLRK
Sbjct: 291 ESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRK 350
Query: 408 CCNHPYLFDGAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDIL 467
C+HPYLF G EP P+ EHLV GKL +LD+LL +L + RVL+FSQMT LDIL
Sbjct: 351 ACSHPYLFPGIEP-EPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDIL 409
Query: 468 EDYCLWRQYKYCRLDGQTPHEDRNRQIEEYN----------MEGSEKFVFMLSTRAGGLG 517
+D+ R+Y Y RLDG E+R I+ ++ ++GS FVFM+STRAGG+G
Sbjct: 410 QDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVG 469
Query: 518 INLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKL 577
+NL +AD VI Y+ DWNPQ+D QA+ RAHRIGQ V L+T+++VEE I+ RAE KL
Sbjct: 470 LNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKL 529
Query: 578 RLDKLVI 584
+L V+
Sbjct: 530 QLSHNVV 536
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 338 bits (831), Expect = 1e-92
Identities = 208/536 (38%), Positives = 303/536 (56%), Gaps = 32/536 (5%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P ++ G + +Q+ LNW+ + N ILADEMGLGKT+ + L + V P
Sbjct: 667 PQELRGGALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARP 726
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRE-----------TLMPGNW 232
+V+VP ST+ NW++EF W P L V G + R IR+ T P ++
Sbjct: 727 CLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGR-AIIRDYEWHAKNSTGTTKKPTSY 785
Query: 233 --DVCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGT 290
+V +T+YEM++ + S + W +V+DE HR+KN +SKL LL F +R+LLTGT
Sbjct: 786 KFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGT 845
Query: 291 PLQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXX 350
PLQNN+ E++ LLNFL P F S F+ F+ L + V L ++ P +LRR
Sbjct: 846 PLQNNIGEMYNLLNFLQPSSFPSLSSFEERFHD---LTSAEKVEELKKLVAPHMLRRLKK 902
Query: 351 XXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGK-VEKMRLQNILMQLRKCC 409
L+ +Q E+Y +L K+ ++ GK V + + NI+MQLRK C
Sbjct: 903 DAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 962
Query: 410 NHPYLFDGAEP--GPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDIL 467
NHPYL G EP G + + KLT+L +L L ++ RVLIFSQMT++LDIL
Sbjct: 963 NHPYLIPGTEPESGSLEFLHDMRIKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDIL 1022
Query: 468 EDYCL--WRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADV 525
EDY + + R+DG DR I +N + +FVF+LSTRA GLGINL +AD
Sbjct: 1023 EDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQD-KNRFVFLLSTRACGLGINLATADT 1081
Query: 526 VIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVI- 584
VIIYDSD+NP D+QAM+RAHRIGQ K++ V+RL+ +VEE+I++ A+ KL LD+L +
Sbjct: 1082 VIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVN 1141
Query: 585 QSGRLVDTKNQL--NKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKGESKTEE 638
+SG + ++ L +E+ N G N KD+ ++ ++D I+ ESK+ +
Sbjct: 1142 KSGSQKEFEDILRWGTEELFN-DSAGEN----KKDTAESNGNLDVIMDL-ESKSRK 1191
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 337 bits (829), Expect = 2e-92
Identities = 171/390 (43%), Positives = 254/390 (65%), Gaps = 10/390 (2%)
Query: 232 WDVCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTP 291
+DV +TSYEMI + +V K W M++DE HR+KN+ SKL L ++ S +R+LLTGTP
Sbjct: 394 FDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTP 453
Query: 292 LQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXX 351
LQNNL EL+ L++FL F S ++F F + + +SRLH +L P LLRR
Sbjct: 454 LQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQISRLHKMLAPHLLRRVKKD 510
Query: 352 XXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNH 411
LS +Q+E+Y + ++ V+ G + + L NI+M+LRK C H
Sbjct: 511 VMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKKGGAQ-ISLNNIMMELRKVCCH 569
Query: 412 PYLFDGAEPGPPYTTD--EHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILED 469
PY+ +G EP + + L+ +CGKL +LDK++ KL+EQ RVLI++Q MLD+LED
Sbjct: 570 PYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLED 629
Query: 470 YCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIY 529
YC ++++Y R+DG+ +R +I+ +N + S KF F+LSTRAGGLGINL +AD VIIY
Sbjct: 630 YCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIY 689
Query: 530 DSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRL 589
DSDWNP DLQAM RAHR+GQ +V ++RLI T+EE++++ + K+ L+ LV+ G+L
Sbjct: 690 DSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV--GKL 747
Query: 590 VDTKNQLNKDEMLNMIRHGANHVFASKDSE 619
T+N +N++E+ ++IR+G+ +FAS+D E
Sbjct: 748 -KTQN-INQEELDDIIRYGSKELFASEDDE 775
Score = 84.6 bits (200), Expect = 3e-16
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 119 RFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFK 178
+F+ +P ++K G + YQ+ GLN++ + + ILADEMGLGKT+Q+I+LL + F+
Sbjct: 261 QFDHTPEFLK-GLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASL--FE 317
Query: 179 NVPGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRE 225
PH+VI P STL NW EF W P + V G + R IRE
Sbjct: 318 ENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQAR-AVIRE 363
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 251 bits (614), Expect = 2e-66
Identities = 126/302 (41%), Positives = 183/302 (60%), Gaps = 11/302 (3%)
Query: 124 PHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGP 183
P +K+ +R+YQ GL+W++++YE +NGILADEMGLGKT+ TI+LL ++ K + GP
Sbjct: 529 PFLLKHS-LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGP 587
Query: 184 HIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
H+++VP S + NW EF KWCP+ K + G + R + + ++ VCIT+Y ++I
Sbjct: 588 HLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVI 647
Query: 244 REKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALL 303
++ +FK+ W+Y+++DEAH IKN KS+ + L F S R+LLTGTPLQN+L ELW+L+
Sbjct: 648 QDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLM 707
Query: 304 NFLLPDVFNSSDDFDSWF-NTNAALGDNQ------LVSRLHAVLRPFLLRRXXXXXXXXX 356
+FL+P VF S +F WF N A + + Q ++ RLH VLRPFLLRR
Sbjct: 708 HFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQL 767
Query: 357 XXXXXXXXXXGLSKMQREWYTK-VLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLF 415
LSK QR Y + + +G + +I+MQLRK CNHP LF
Sbjct: 768 PSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSF--FGMISIIMQLRKVCNHPDLF 825
Query: 416 DG 417
+G
Sbjct: 826 EG 827
Score = 173 bits (422), Expect = 4e-43
Identities = 86/165 (52%), Positives = 115/165 (69%), Gaps = 2/165 (1%)
Query: 424 YTTDEHLV-YNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLD 482
Y D L+ ++CGKL L LL KL+ R LIF+QMT+MLD+LE + Y Y RLD
Sbjct: 1063 YFPDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLD 1122
Query: 483 GQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAM 542
G TP E+R ++ +N + F+F+LSTR+GG+GINL AD VI YDSDWNP MD QA
Sbjct: 1123 GSTPPEERQTLMQRFNTN-PKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQ 1181
Query: 543 DRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSG 587
DR HRIGQ ++V ++RLI+++T+EE I+++A K LD LVIQ+G
Sbjct: 1182 DRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNG 1226
>At3g57300.1 68416.m06378 transcriptional activator, putative
similar to transcriptional activator SRCAP [Homo
sapiens] GI:5106572; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 1507
Score = 238 bits (582), Expect = 2e-62
Identities = 122/318 (38%), Positives = 189/318 (59%), Gaps = 24/318 (7%)
Query: 123 SPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPG 182
+P K G +++YQ++GL W+++ YE G+NGILADEMGLGKT+Q ++ L ++ KN+ G
Sbjct: 578 TPELFK-GTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWG 636
Query: 183 PHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMP-------GNWDVC 235
P +V+ P S L NW +E ++CP LK + G + R T +R+ + P + +
Sbjct: 637 PFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQER-TILRKNINPKRMYRRDAGFHIL 695
Query: 236 ITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNN 295
ITSY++++ ++ F++ W+YMV+DEA IK+ S + L F NRLLLTGTP+QNN
Sbjct: 696 ITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNN 755
Query: 296 LHELWALLNFLLPDVFNSSDDFDSWFNT--------NAALGDNQLVSRLHAVLRPFLLRR 347
+ ELWALL+F++P +F++ D F+ WF+ L ++QL +RLHA+L+PF+LRR
Sbjct: 756 MAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQL-NRLHAILKPFMLRR 814
Query: 348 XXXXXXXXXXXXXXXXXXXGLSKMQREWY----TKVLMKDIDVVNGAGKVEK--MRLQNI 401
LS Q+ +Y K+ + ++ N +K + L NI
Sbjct: 815 VKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNI 874
Query: 402 LMQLRKCCNHPYLFDGAE 419
++QLRK CNHP LF+ E
Sbjct: 875 VIQLRKVCNHPELFERNE 892
Score = 181 bits (441), Expect = 2e-45
Identities = 90/160 (56%), Positives = 116/160 (72%), Gaps = 1/160 (0%)
Query: 430 LVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHED 489
L+ + GKL LD LL +L+ RVL+F+QMT+ML+ILEDY +R+YKY RLDG + D
Sbjct: 1201 LLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMD 1260
Query: 490 RNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIG 549
R + ++ S+ FVF+LSTRAGGLGINLT+AD VI Y+SDWNP +DLQAMDRAHR+G
Sbjct: 1261 RRDMVRDFQHR-SDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1319
Query: 550 QKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRL 589
Q K V V+RLI TVEEKI+ RA K + +LV+ G +
Sbjct: 1320 QTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTGGHV 1359
Score = 33.9 bits (74), Expect = 0.56
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 35 ESKIETDRSKRFDFLLKQTEIFSHFMTN 62
E + + +R +FL+KQTE++SHFM N
Sbjct: 444 EQRESKRQQQRLNFLIKQTELYSHFMQN 471
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 215 bits (525), Expect = 1e-55
Identities = 174/597 (29%), Positives = 279/597 (46%), Gaps = 84/597 (14%)
Query: 131 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPG------PH 184
++R YQ G+NW+ L ++GIL D+MGLGKTLQ +++ + P
Sbjct: 1443 QLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDELDVFPS 1502
Query: 185 IVIVPKSTLTNWMNEFKKWCP-SLKAVC-LIGDQETRNTFIRETLMPGNWDVCITSYEMI 242
I++ P + + +W E +K+ SL +V +G + R + +RE N +V ITSY+++
Sbjct: 1503 IIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVS-LREQF--NNHNVIITSYDVV 1559
Query: 243 IREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWAL 302
++ +F+W Y ++DE H IKN KSK++ +++ K+ +RL+L+GTP+QNN+ ELW+L
Sbjct: 1560 RKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSL 1619
Query: 303 LNFLLPDVFNSSDDFDSWF--------NTNAALGDNQ----LVSRLHAVLRPFLLRRXXX 350
+FL+P + F + + + + D + + LH + PFLLRR
Sbjct: 1620 FDFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKE 1679
Query: 351 XXXXXXXXXXXXXXXXGLSKMQREWY------------TKVLMKDIDVVNGAGKVEKMRL 398
LS +Q + Y + ++ D +G V +
Sbjct: 1680 EVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKA 1739
Query: 399 QNILMQ----LRKCCNHPYLFDGAEPGPPYT--------------TDEHLVYNCGKLTIL 440
+ Q L K C+HP L G + P T+ H V + KL L
Sbjct: 1740 STHVFQALQYLLKLCSHPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVAL 1799
Query: 441 DKLLPK-------------LQEQESRVLIFSQMTRMLDILEDYCLWRQYK---YCRLDGQ 484
++L + L + RVLIF+Q +LDI+E K Y RLDG
Sbjct: 1800 QEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGS 1859
Query: 485 TPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMD------ 538
E R ++ +N + + V +L+T GGLG+NLTSAD ++ + DWNP D
Sbjct: 1860 VVPEKRFEIVKAFNSDPTID-VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFANI 1918
Query: 539 -----LQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTK 593
QAMDRAHR+GQK+ V V RLI T+EEK++ + K+ + VI + +
Sbjct: 1919 ELNKLWQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENA--SM 1976
Query: 594 NQLNKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKGESKTEELKQKLESLGESS 650
+N D++L++ S+ ED D I G+ + + LE L + S
Sbjct: 1977 KTMNTDQLLDLFASAETSKKGGGSSKKGSEDNDQIAGTGKG-MKAILGNLEELWDQS 2032
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 214 bits (522), Expect = 3e-55
Identities = 130/365 (35%), Positives = 193/365 (52%), Gaps = 22/365 (6%)
Query: 236 ITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNN 295
IT+YE + + W Y V+DE HRI+N S ++ + ++ ++++R+++TG P+QN
Sbjct: 521 ITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNK 580
Query: 296 LHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHA--------VLR----PF 343
L ELW+L +F+ P F++ F+ +G S L VLR P+
Sbjct: 581 LTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 640
Query: 344 LLRRXXXXXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILM 403
LLRR L+ QR Y L V + L I +
Sbjct: 641 LLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASS--EVEQIFDGNRNSLYGIDV 698
Query: 404 QLRKCCNHPYLFDG--AEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMT 461
+RK CNHP L + + P Y E GK+ ++ ++L ++Q RVL+FSQ
Sbjct: 699 -MRKICNHPDLLEREHSHQNPDYGNPER----SGKMKVVAEVLKVWKQQGHRVLLFSQTQ 753
Query: 462 RMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLT 521
+MLDILE + + +Y Y R+DG TP + R I+E+N + FVF+L+T+ GGLG NLT
Sbjct: 754 QMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFN-NSEDMFVFVLTTKVGGLGTNLT 812
Query: 522 SADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDK 581
A+ VII+D DWNP D+QA +RA RIGQKK V V+RLIT T+EEK+ R K L
Sbjct: 813 GANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTN 872
Query: 582 LVIQS 586
++++
Sbjct: 873 KILKN 877
Score = 69.7 bits (163), Expect = 9e-12
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 134 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVPKSTL 193
DYQ G+ W+ L+ GI+ DEMGLGKT+Q +S LG + HF + P I+I P + L
Sbjct: 387 DYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSL-HFSKMYKPSIIICPVTLL 445
Query: 194 TNWMNEFKKWCP 205
W E +KW P
Sbjct: 446 RQWRREAQKWYP 457
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 195 bits (476), Expect = 1e-49
Identities = 148/504 (29%), Positives = 233/504 (46%), Gaps = 52/504 (10%)
Query: 132 MRDYQVRGLNWMISLYEN-----GING-ILADEMGLGKTLQTISLLGYM--KHFKNVP-- 181
+R +Q G+ +M ING ILAD+MGLGKTLQ+I+LL + + F P
Sbjct: 76 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 135
Query: 182 GPHIVIVPKSTLTNWMNEFKKWCPS---LKAVCLIGDQETRNTFIRETLMPGNWDVCITS 238
I++ P S ++NW E KKW L A+C + + T V I S
Sbjct: 136 KKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLIIS 195
Query: 239 YEMIIREKSVF-KKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLH 297
YE S F + + ++ DEAHR+KN+++ + L R+LL+GTP+QN+L
Sbjct: 196 YETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLE 255
Query: 298 ELWALLNFLLPDVFNSSDDFDSWFNTNAALG---------DNQLVSR---LHAVLRPFLL 345
E +A++NF P + F ++ G N R L + + F+L
Sbjct: 256 EFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFIL 315
Query: 346 RRXXXXXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQL 405
RR ++ +Q Y + A ++ ++ + L
Sbjct: 316 RRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYITAL 375
Query: 406 RKCCNHPYL-FDGAEPGPPYTT------------------------DEHLVYNCGKLTIL 440
+K CNHP L +D + G P T D V GK+ +L
Sbjct: 376 KKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGKMHVL 435
Query: 441 DKLLPKLQEQ-ESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNM 499
+LL L+ + + R+++ S T+ LD+ C R+Y + RLDG T R + + N
Sbjct: 436 SRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLND 495
Query: 500 EGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRL 559
++F F+LS++AGG G+NL A+ ++++D DWNP D QA R R GQKK+V V+R
Sbjct: 496 PTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRF 555
Query: 560 ITDNTVEEKIVERAEVKLRLDKLV 583
++ T+EEK+ +R K L K++
Sbjct: 556 LSTGTIEEKVYQRQMSKEGLQKVI 579
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 171 bits (415), Expect = 3e-42
Identities = 105/313 (33%), Positives = 163/313 (52%), Gaps = 36/313 (11%)
Query: 132 MRDYQVRGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVPK 190
++ YQ+ G+N+++ LY+ GI G ILADEMGLGKT+Q I+ L + N PGPH+V+ P
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272
Query: 191 STLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRE------TLMPGNWDVCITSYEMIIR 244
S L NW E +KWCPS + G R + RE P ++V + Y + R
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHG--AARAAYSRELNSLSKAGKPPPFNVLLVCYSLFER 330
Query: 245 -------EKSVFKKFNWRYMVIDEAHRIKNEKS-KLSELLREFKSMN-RLLLTGTPLQNN 295
++ V K++ W +++DEAH +K++ S + L+ ++ N RL+LTGTPLQN+
Sbjct: 331 HSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQND 390
Query: 296 LHELWALLNFLLPDVFNSSD-DFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXX 354
LHELW+LL F+LPD+F + + D N D +L++R+ ++L PF+LRR
Sbjct: 391 LHELWSLLEFMLPDIFTTENVDLKKLLNAE----DTELITRMKSILGPFILRRLKSDVMQ 446
Query: 355 XXXXXXXXXXXXGLSKMQREWY------------TKVLMKDIDVVNGAGK-VEKMRLQNI 401
+ + Q + Y +++ +N K + K ++ N
Sbjct: 447 QLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNY 506
Query: 402 LMQLRKCCNHPYL 414
Q RK NHP L
Sbjct: 507 FTQFRKIANHPLL 519
Score = 149 bits (362), Expect = 7e-36
Identities = 88/182 (48%), Positives = 113/182 (62%), Gaps = 3/182 (1%)
Query: 411 HPYLFD-GAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILED 469
H LF G +D+H++ + K L +LLP +++ RVLIFSQ T MLDILE
Sbjct: 564 HQLLFQYGVNDTKGTLSDKHVMLSA-KCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEW 622
Query: 470 YCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIY 529
Y RLDG T DR ++ +N + S F +LSTRAGG G+NLT AD VII+
Sbjct: 623 TLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSI-FACLLSTRAGGQGLNLTGADTVIIH 681
Query: 530 DSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRL 589
D D+NPQ+D QA DR HRIGQ K V +FRL+T +TV+E I E A+ KL LD V++SG
Sbjct: 682 DMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESGVH 741
Query: 590 VD 591
VD
Sbjct: 742 VD 743
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 141 bits (341), Expect = 2e-33
Identities = 66/154 (42%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 431 VYNCGKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDR 490
V +CGK+ L+KL+ + ++L+FS RMLDILE + + + Y + RLDG TP R
Sbjct: 524 VKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLR 583
Query: 491 NRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQ 550
++++N S++ VF++ST+AGGLG+NL SA+ V+I+D +WNP DLQA DR+ R GQ
Sbjct: 584 QSLVDDFNASPSKQ-VFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQ 642
Query: 551 KKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVI 584
K+ V VFRL++ ++EE + R K +L + +
Sbjct: 643 KRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV 676
Score = 129 bits (311), Expect = 1e-29
Identities = 73/210 (34%), Positives = 111/210 (52%), Gaps = 13/210 (6%)
Query: 129 NGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG--YMKH--------FK 178
N + ++Q G+ +M +LY+N GIL D+MGLGKT+QTI+ L Y K +
Sbjct: 136 NCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLE 195
Query: 179 NVPGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITS 238
+ GP ++I P S + NW +EF +W K G + I E L +V +TS
Sbjct: 196 SDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHG---SNRDMILEKLKARGVEVLVTS 252
Query: 239 YEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHE 298
++ + V NW ++ DEAHR+KNEKSKL E E K+ R+ LTGT +QN + E
Sbjct: 253 FDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISE 312
Query: 299 LWALLNFLLPDVFNSSDDFDSWFNTNAALG 328
L+ L ++ P + + F +++ LG
Sbjct: 313 LFNLFEWVAPGSLGTREHFRDFYDEPLKLG 342
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 130 bits (314), Expect = 5e-30
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 6/247 (2%)
Query: 436 KLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIE 495
KL+ + LL L + RVLIFSQ +ML++++D Y + R+DG T DR + +E
Sbjct: 733 KLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVE 792
Query: 496 EYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVR 555
E+ EG +F+L+++ GGLG+ LT AD VI+ D WNP D Q++DRA+RIGQ K V
Sbjct: 793 EFQ-EGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVI 851
Query: 556 VFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMIRHGANHVFAS 615
V+RL+T TVEEKI + K L K + + +Q + E+ ++ + G + +
Sbjct: 852 VYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKGGFD--VSP 909
Query: 616 KDSEVTDEDIDTILAKGESKTEELKQKLESLGESSLRAFS-MDTPGATTDSVYQFEGEDY 674
++ +E + I K + K E + LE+LG + + S + + A ++ + E E
Sbjct: 910 TQQQLYEEHYNQI--KLDEKLESHVKFLETLGIAGVSHHSLLFSKTAPIQAIQKDEEEQI 967
Query: 675 REKQKVI 681
R + ++
Sbjct: 968 RRETALL 974
Score = 113 bits (273), Expect = 4e-25
Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 135 YQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKNVPGPHIVIVPKSTLT 194
+Q GLNW+ SL+ G GIL D+MGLGKT+Q S L + H K + +V+ PK+ L
Sbjct: 380 HQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRA-LVVAPKTLLP 438
Query: 195 NWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIREKSVFKKFN- 253
+WM E S G + ++ G + +T+Y+++ + +
Sbjct: 439 HWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGK-GILLTTYDIVRNNTKALQGDDH 497
Query: 254 -----------WRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWAL 302
W YM++DE H IKN ++ ++ L E S +R++++GTP+QNNL ELWAL
Sbjct: 498 YTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWAL 557
Query: 303 LNFLLPDVFNSSDDFDSWFNTN 324
NF P + +WF N
Sbjct: 558 FNFSCPGLLGDK----NWFKQN 575
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 118 bits (285), Expect = 2e-26
Identities = 113/474 (23%), Positives = 212/474 (44%), Gaps = 41/474 (8%)
Query: 120 FEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHFKN 179
+E P +I+ ++ +Q G+ +++ ++G +LADEMGLGKTLQ I++ ++
Sbjct: 161 YEKIPSHIEP-KLLPFQREGIEFIL---QHGGRVLLADEMGLGKTLQAIAVTTCVQE--- 213
Query: 180 VPGPHIVIVPKSTLTNWMNEFKKWC---PSLKAVCLI---GDQETRNTFIRETL-----M 228
P ++I P S +W +W PS V L G + T + +
Sbjct: 214 -SWPVLIIAPSSLRLHWATMIHQWLHVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHL 272
Query: 229 PGNWDVCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREF--KSMNRLL 286
G ++ I SY+++ + + +++ ++ DE+H +KN ++K + K+ +L
Sbjct: 273 DGVFN--IVSYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKKAQYAIL 330
Query: 287 LTGTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSR---LHAVLRPF 343
L+GTP + EL+ L L PDV+ + ++ + G Q S LH +++
Sbjct: 331 LSGTPALSRPIELFKQLEALYPDVYRNIHEYGGRYCKGGFFGTYQGASNHDELHNLMKAT 390
Query: 344 LLRRXXXXXXXXXXXXXXXXXXXGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILM 403
++ R SK +++ + + KD+ +N L+ +
Sbjct: 391 VMIRRLKKDVLTELP----------SKRRQQVFLDLAAKDMKQINALFH----ELKVVKS 436
Query: 404 QLRKCCNHPYLFDGAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQESRVLIFSQMTRM 463
+++ C + + + K+ + L + E + L+F+ M
Sbjct: 437 KIKDCISEDDIKSLKFIEKNLINKIYTDSAVAKIPAVLDYLENVIEAGCKFLVFAHHQSM 496
Query: 464 LDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSA 523
L+ L + ++ R+DG TP R + ++ + K +LS RA G+GI LT+A
Sbjct: 497 LEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAA-VLSIRAAGVGITLTAA 555
Query: 524 DVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKL 577
VI + W P +QA DRAHRIGQ V + L+ ++TV++ I + + KL
Sbjct: 556 STVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKL 609
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 107 bits (257), Expect = 4e-23
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 6/170 (3%)
Query: 436 KLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIE 495
K+T L + L L+ S+ ++FSQ T LD+L+ + + RLDG + R + ++
Sbjct: 864 KITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLK 923
Query: 496 EYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVR 555
E++ +GS V ++S +AGG+GINLT+A + D WNP ++ QA+ R HRIGQ K+V+
Sbjct: 924 EFSEDGSI-LVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVK 982
Query: 556 VFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMI 605
+ R I TVEE++ V+ R +++ SG L D + + + E L M+
Sbjct: 983 IRRFIVKGTVEERM---EAVQARKQRMI--SGALTDQEVRSARIEELKML 1027
Score = 79.8 bits (188), Expect = 9e-15
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 22/252 (8%)
Query: 182 GPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEM 241
G ++++ P + L W E + + ++R ++ + DV IT+Y +
Sbjct: 490 GGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRP---KDAKLLSQSDVVITTYGV 546
Query: 242 IIREKSVFKKFN--------WRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQ 293
+ E S + W +V+DEAH IKN KS++S + R LTGTP+Q
Sbjct: 547 LTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQ 606
Query: 294 NNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXX 353
NNL +L++LL FL + + + ++ GD + + + ++L+P +LRR
Sbjct: 607 NNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTD 666
Query: 354 XXXX------XXXXXXXXXGLSKMQREWYTKVLMKD---IDVVNGAGKV--EKMRLQNIL 402
LS+ +R++Y + + D GKV + +L
Sbjct: 667 REGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELL 726
Query: 403 MQLRKCCNHPYL 414
++LR+CC+HP+L
Sbjct: 727 LRLRQCCDHPFL 738
Score = 34.7 bits (76), Expect = 0.32
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 153 GILADEMGLGKTLQTISLL 171
GILAD MGLGKT+ TISLL
Sbjct: 415 GILADAMGLGKTVMTISLL 433
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 107 bits (256), Expect = 5e-23
Identities = 62/172 (36%), Positives = 106/172 (61%), Gaps = 8/172 (4%)
Query: 436 KLTILDKLLPKLQEQES--RVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQ 493
K++ L K L K+++ S + ++FSQ T LD+LE R +++ R DG+ + R +
Sbjct: 1110 KVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKV 1169
Query: 494 IEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQ 553
++E+N E +K + ++S +AGG+G+NLT+A V + D WNP ++ QA+ R HRIGQK+
Sbjct: 1170 LKEFN-ETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRT 1228
Query: 554 VRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMI 605
V V R I +TVEE++ +V+ R +++ +G L D + + + E L M+
Sbjct: 1229 VFVRRFIVKDTVEERM---QQVQARKQRMI--AGALTDEEVRSARLEELKML 1275
Score = 85.8 bits (203), Expect = 1e-16
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 16/248 (6%)
Query: 182 GPHIVIVPKSTLTNWMNEFKKWCP--SLKAVCLIGDQETRNT--FIRETLMPGNWDVCIT 237
G ++I P + L+ W +E + ++ + G T + ++ + V +
Sbjct: 741 GGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTS 800
Query: 238 SYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLH 297
+Y+ + S+F + +W +V+DEAH IK+ K++ ++ E S R LTGTPLQN L
Sbjct: 801 AYKQDMAN-SIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLE 859
Query: 298 ELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXX 357
+L++LL FL + + + + GD + + + A+LRP +LRR
Sbjct: 860 DLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGS 919
Query: 358 X------XXXXXXXXGLSKMQREWYTKVLMK---DIDVVNGAGKV--EKMRLQNILMQLR 406
S+ +R++YT + + D GKV + +L++LR
Sbjct: 920 LILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLR 979
Query: 407 KCCNHPYL 414
+CCNHP+L
Sbjct: 980 QCCNHPFL 987
Score = 32.7 bits (71), Expect = 1.3
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 153 GILADEMGLGKTLQTISLL 171
GILAD MGLGKT+ TI+L+
Sbjct: 683 GILADAMGLGKTVMTIALI 701
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 103 bits (246), Expect = 8e-22
Identities = 133/525 (25%), Positives = 220/525 (41%), Gaps = 58/525 (11%)
Query: 140 LNWMISLYENGING-ILADEMGLGKTLQTISLL-GYMKHFKNVPGPHIVIVPKSTLTNWM 197
+N + S+ G G I++ + G GKT T+ L Y+K F N +VI P + + W
Sbjct: 598 INELNSVGVKGSGGCIISHKAGTGKTRLTVVFLQSYLKRFPN--SHPMVIAPATLMRTWE 655
Query: 198 NEFKKW---CP--SLKAVCLIGDQET----------RNTFIRETLMPGNW------DVCI 236
+E +KW P ++ ++ L G ++ + IR + W +
Sbjct: 656 DEVRKWNVNIPFYNMNSLQLSGYEDAEAVSRLEGNRHHNSIRMVKLVSWWKQKSILGISY 715
Query: 237 TSYEMIIREKSVFKKFNWRYMVI--------DEAHRIKNEKSKLSELLREFKSMNRLLLT 288
YE + K+ +R M++ DE H +N+ S + ++L E ++ R+ L+
Sbjct: 716 PLYEKLAANKNTEGMQVFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLS 775
Query: 289 GTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRX 348
GT QNN EL +L P D S + + R++ R L+
Sbjct: 776 GTLFQNNFKELSNVLCLARP---ADKDTISSRIHELSKCSQEGEHGRVNEENRIVDLKAM 832
Query: 349 XXXXXXXXXXXXXXXXXXGLSK----MQREWYTKVLMKDIDVVNGAGKVE-KMRLQNILM 403
GL + + K ++ ID + E K+ ++
Sbjct: 833 IAHFVHVHEGTILQESLPGLRDCVVVLNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHP 892
Query: 404 QLRKCCNHPYLFDGAEPGPPY--TTDE-HLVYNCG-KLTILDKLLPKLQEQESRVLIFSQ 459
L CCN P + GP T L Y G K L + + +VL++SQ
Sbjct: 893 SLYLCCN-PTKKEDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQ 951
Query: 460 MTRMLDILEDY----CLWRQYKYCRL-DGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAG 514
L ++ + C W + + L G+ DR I+ +N S V + ST+A
Sbjct: 952 YIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKAC 1011
Query: 515 GLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVE-EKIVERA 573
GI+L A V+I D WNP ++ QA+ RA RIGQK+ V ++ L+ +T E K +++
Sbjct: 1012 SEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQS 1071
Query: 574 EVKLRLDKLVIQSGRLVD---TKNQLNKDEMLN-MIRH-GANHVF 613
E K R+ +LV S D ++KD +L+ M+RH H+F
Sbjct: 1072 E-KHRISELVFSSTNEKDKPINNEVVSKDRILDEMVRHEKLKHIF 1115
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 101 bits (241), Expect = 3e-21
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 34/231 (14%)
Query: 435 GKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYC-----------LWRQYK--Y--- 478
GK+ +L +L + + L+FSQ LD++E Y W++ K Y
Sbjct: 1083 GKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRLT 1142
Query: 479 ------CRLDGQTPHEDRNRQIEEYNMEGSEKF-VFMLSTRAGGLGINLTSADVVIIYDS 531
CR+DG+T +R + ++ +N +++ ++STRAG LGINL +A+ VII D
Sbjct: 1143 LTSLDGCRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDG 1202
Query: 532 DWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVD 591
WNP DLQA+ RA R GQKK V +RL+ T+EEKI +R K L V+ ++
Sbjct: 1203 SWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVHR 1262
Query: 592 TKNQLNKDEMLNMIRHGANHVFASKDSEVTDEDIDTILAKGESKTEELKQK 642
T ++K+EML H+F D + E + I + E+ L ++
Sbjct: 1263 T---ISKEEML--------HLFEFDDDDEKSEAVTEISKQNEAGHSNLVEQ 1302
Score = 80.6 bits (190), Expect = 5e-15
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 148 ENGINGILADEMGLGKTLQTISLLGYMKHFKNVP-GPHIVIVPKSTLTNWMNEFKKWCPS 206
+ G+ ILA MGLGKT Q I+ L ++ +++ P + L NW +EF+KW PS
Sbjct: 713 DKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPS 772
Query: 207 -LKA--VCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIREKSV---FKKFNWR----- 255
+K + ++GD F T V + Y R S+ K N
Sbjct: 773 EVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNF-RNLSLGRGVKDLNAARGICN 831
Query: 256 -------YMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLP 308
+V DEAH IKN K+ ++ L++ K R+ LTG+PLQNNL E + +++F+
Sbjct: 832 ALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 891
Query: 309 DVFNSSDDFDSWF 321
SS +F + F
Sbjct: 892 GFLGSSPEFRNRF 904
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 100 bits (239), Expect = 6e-21
Identities = 55/143 (38%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 439 ILDKLLPKLQEQ-ESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEY 497
+L L+ QE ++ ++FSQ +ML +LE + RLDG + R + I E+
Sbjct: 693 LLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEF 752
Query: 498 -NMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRV 556
N E + V + S +A G GINLT+A V ++D WNP ++ QAMDR HRIGQK++V++
Sbjct: 753 GNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKM 812
Query: 557 FRLITDNTVEEKIVERAEVKLRL 579
R+I N++EE+++E + K L
Sbjct: 813 IRMIARNSIEERVLELQQKKKNL 835
Score = 78.6 bits (185), Expect = 2e-14
Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 16/277 (5%)
Query: 185 IVIVPKSTLTNWMNEFKKWC-PSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII 243
+++ P S ++ W+ + ++ P + V + E R + E + +D+ +T+Y +
Sbjct: 342 LIVCPPSVISAWITQLEEHTVPGILKVYMYHGGE-RTDDVNELM---KYDIVLTTYGTLA 397
Query: 244 REKS----VFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHEL 299
E+S KK W +++DEAH IKN ++ S ++ + K+ R +TGTP+QN +L
Sbjct: 398 VEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDL 457
Query: 300 WALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXX 359
++L+ FL + F+ + S G+ + +SRL ++ LRR
Sbjct: 458 YSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSLIGLPPK 517
Query: 360 XXXXXXXGLSKMQREWYTKVLMKDIDVV-----NGAGKVEKMRLQNILMQLRKCCNHPYL 414
LS +R+ Y + + VV NG+ + +I+++LR+ C+ L
Sbjct: 518 TVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSL 577
Query: 415 FDGAEPGPPYTTDEHLVYNCGKLTILDKLLPKLQEQE 451
+TT + K +L KL+ LQ+ E
Sbjct: 578 CPPELRS--FTTSTSVEDVTDKPELLQKLVAALQDGE 612
Score = 32.3 bits (70), Expect = 1.7
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 153 GILADEMGLGKTLQTISLLGYMKH 176
G+ AD+MGLGKTL +SL+ + ++
Sbjct: 262 GVFADDMGLGKTLTLLSLIAFDRY 285
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 96.3 bits (229), Expect = 9e-20
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Query: 453 RVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTR 512
+ +IFSQ T MLD++E + ++ RLDG R+R ++E++ + K V ++S +
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVK-VMIMSLK 886
Query: 513 AGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVER 572
AG LG+N+ +A VI+ D WNP + QA+DRAHRIGQ + V V R+ NTVE++I+
Sbjct: 887 AGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILAL 946
Query: 573 AEVKLRL 579
E K ++
Sbjct: 947 QEEKRKM 953
Score = 60.5 bits (140), Expect = 6e-09
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 10/180 (5%)
Query: 245 EKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLN 304
+ K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++
Sbjct: 462 DSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFR 521
Query: 305 FLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXXXXXXX 364
FL D + F + Q +L AVLR +LRR
Sbjct: 522 FLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPK 581
Query: 365 XXGLSKM-----QREWYTKV---LMKDIDVVNGAGKVEK--MRLQNILMQLRKCCNHPYL 414
LS++ +R +Y K+ AG + + + +L++LR+ C+HP L
Sbjct: 582 TINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQL 641
Score = 35.9 bits (79), Expect = 0.14
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 135 YQVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 176
+Q L WM N ++ GILAD+ GLGKT+ TI+L+ H
Sbjct: 229 HQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMH 273
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to transcription factor RUSH-1alpha
[Oryctolagus cuniculus] GI:1655930; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1047
Score = 95.5 bits (227), Expect = 2e-19
Identities = 51/124 (41%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Query: 453 RVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTR 512
+ +IFSQ T MLD++E L ++ RLDG R+R ++E++ + K V ++S +
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVK-VMLMSLK 952
Query: 513 AGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVER 572
AG LG+N+ +A VI+ D WNP + QA+DRAHRIGQ + V V R+ +TVE++I++
Sbjct: 953 AGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKL 1012
Query: 573 AEVK 576
E K
Sbjct: 1013 QEEK 1016
Score = 61.7 bits (143), Expect = 2e-09
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
Query: 251 KFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPDV 310
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 539 KVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDP 598
Query: 311 FNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXXXXXXXXXGLSK 370
+ F S + Q +L AVLR +LRR LS+
Sbjct: 599 YAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLSQ 658
Query: 371 M-----QREWYTKV---LMKDIDVVNGAGKVEK--MRLQNILMQLRKCCNHPYL 414
+ +R +Y K+ AG + + + +L++LR+ C+HP L
Sbjct: 659 VDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQL 712
Score = 34.7 bits (76), Expect = 0.32
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 135 YQVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLL 171
+Q L WM + N GILAD+ GLGKT+ TI+L+
Sbjct: 284 HQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALI 323
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 90.6 bits (215), Expect = 5e-18
Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 3/130 (2%)
Query: 448 QEQESRVLIFSQMTRMLDILEDYCLWRQYKYC-RLDGQTPHEDRNRQIEEYNMEGSEKFV 506
++ ++ ++FSQ T LD++ +Y L + C +L G R+ I ++ E + V
Sbjct: 677 RDGSAKAIVFSQFTSFLDLI-NYTLGKCGVSCVQLVGSMTMAARDTAINKFK-EDPDCRV 734
Query: 507 FMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVE 566
F++S +AGG+ +NLT A V + D WNP ++ QA DR HRIGQ K +RV R I +NTVE
Sbjct: 735 FLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVE 794
Query: 567 EKIVERAEVK 576
E+I+ + K
Sbjct: 795 ERILRLQKKK 804
Score = 55.6 bits (128), Expect = 2e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 244 REKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALL 303
+EKS+ W +++DEAH IK +S + + ++ R L+GTPLQN + EL++L+
Sbjct: 344 KEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLI 403
Query: 304 NFL 306
FL
Sbjct: 404 RFL 406
Score = 54.0 bits (124), Expect = 5e-07
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 135 YQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK-----HFKNVPGPHIVIVP 189
YQ L W ++ GILADEMG+GKT+Q ISL+ + F G +V+ P
Sbjct: 142 YQKEFLAWATKQEQSVAGGILADEMGMGKTIQAISLVLARREVDRAQFGEAAGCTLVLCP 201
Query: 190 KSTLTNWMNEFKKWCP--SLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIRE 245
++ W+NE ++ S K + G + +N I+E + N+D +T+Y + E
Sbjct: 202 LVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKN--IKEFM---NYDFVLTTYSTVESE 254
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 89.8 bits (213), Expect = 8e-18
Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Query: 453 RVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTR 512
+ ++FSQ T+ML++LE + +Y RLDG R++ ++++N E V ++S +
Sbjct: 1132 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTL-PEVTVMIMSLK 1190
Query: 513 AGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVER 572
A LG+N+ +A V++ D WNP + QA+DRAHRIGQ + V V R +TVE++I+
Sbjct: 1191 AASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILAL 1250
Query: 573 AEVK 576
+ K
Sbjct: 1251 QQKK 1254
Score = 64.1 bits (149), Expect = 5e-10
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 251 KFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPDV 310
K +W +V+DEA IKN K++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 791 KVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 850
Query: 311 FNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXXXXXXXXXGLSK 370
++S F S + +L A+L+ +LRR L K
Sbjct: 851 YSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRK 910
Query: 371 M-----QREWYTKVLMKDIDVVN-----GAGKVEKMRLQNILMQLRKCCNHPYLFDG 417
+ +R++Y+K+ + G K + + +L++LR+ C+HP L +G
Sbjct: 911 VDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQACDHPLLVNG 967
Score = 35.1 bits (77), Expect = 0.24
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 135 YQVRGLNWMISLYENGI---NGILADEMGLGKTLQTISLL 171
+Q L+WM +G GILAD+ GLGKT+ TI+L+
Sbjct: 566 HQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALI 605
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 87.8 bits (208), Expect = 3e-17
Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Query: 453 RVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTR 512
+ ++F+Q T+MLD+LE +Y R DG+ R+ ++++N + V ++S +
Sbjct: 1073 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTL-PDVSVMIMSLK 1131
Query: 513 AGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVER 572
A LG+N+ +A VI+ D WNP + QA+DRAHRIGQ + V+V R +TVE++I+
Sbjct: 1132 AASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILAL 1191
Query: 573 AEVKLRL 579
+ K ++
Sbjct: 1192 QQKKRKM 1198
Score = 65.3 bits (152), Expect = 2e-10
Identities = 57/251 (22%), Positives = 105/251 (41%), Gaps = 23/251 (9%)
Query: 185 IVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIR 244
+++ P S + W +E +K + ++ T L +DV IT+Y ++ +
Sbjct: 636 LIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHEL--AKYDVVITTYSLVSK 693
Query: 245 EKSV-----------FKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQ 293
K + + +W +V+DEA IKN K++ S + R L+GTP+Q
Sbjct: 694 RKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQ 753
Query: 294 NNLHELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXX 353
N++ +L++ FL D ++S F + + L A+L+ +LRR
Sbjct: 754 NSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLL 813
Query: 354 XXXXXXXXXXXXXGL-----SKMQREWYTKVLMKDIDVVN-----GAGKVEKMRLQNILM 403
L +K +R++Y+K+ D G K + + +L+
Sbjct: 814 DGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLL 873
Query: 404 QLRKCCNHPYL 414
+LR+ C HP L
Sbjct: 874 RLRQACGHPLL 884
Score = 34.7 bits (76), Expect = 0.32
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 135 YQVRGLNWMISLYENG---INGILADEMGLGKTLQTISLL 171
+Q L+WM +G GILAD+ GLGKT+ TI+L+
Sbjct: 545 HQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALI 584
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 87.0 bits (206), Expect = 6e-17
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 448 QEQESRVLIFSQMTRMLDILEDYCLWRQYKYC-RLDGQTPHEDRNRQIEEYNMEGSEKFV 506
++ ++ ++FSQ T LD++ Y L + C +L G ++ ++ + E + V
Sbjct: 522 RDWSAKAIVFSQFTSFLDLIS-YALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCR-V 579
Query: 507 FMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVE 566
++S +AGG+ +NLT+A V + D WNP ++ QA DR HRIGQ K VRV R I + TVE
Sbjct: 580 LLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVE 639
Query: 567 EKIV 570
EKI+
Sbjct: 640 EKIL 643
Score = 83.8 bits (198), Expect = 5e-16
Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 33/314 (10%)
Query: 135 YQVRGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYMKHF-----KNVPGPHIVIV 188
YQ L W + + G ILADEMG+GKT+Q ISL+ + + G +V+V
Sbjct: 137 YQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHTLVLV 196
Query: 189 PKSTLTNWMNEFKKWCP--SLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMIIRE- 245
P L+ W++E + S + + G + +N + LM N+D +T+ ++ E
Sbjct: 197 PPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNV---QKLM--NYDFVLTTSPIVENEY 251
Query: 246 ---------KSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNL 296
S W +++DEAH IKN S+ ++ + ++ R L+GTPLQN++
Sbjct: 252 RKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDV 311
Query: 297 HELWALLNFLLPDVFNSSDDFDSWFNTNAALGDNQLV-----SRLHAVLRPFLLRRXXXX 351
EL++L+++ + F S+ ++ +T+ N V + + P +
Sbjct: 312 DELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLSIPVRIENVPAV 371
Query: 352 XXXXXXXXXXXXXXXGLSKMQREWYT---KVLMKDIDVVNGAGKV--EKMRLQNILMQLR 406
LS ++ ++Y KV D AG + + +L++LR
Sbjct: 372 LIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLR 431
Query: 407 KCCNHPYLFDGAEP 420
+ +HPYL + P
Sbjct: 432 QAVDHPYLVSYSSP 445
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 78.6 bits (185), Expect = 2e-14
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 14/228 (6%)
Query: 368 LSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLFDGA-EPGPPYTT 426
LS +Q E Y + L ++ K++ L+ L +RK C+HPY+ D + +
Sbjct: 486 LSDVQLEQYCQTLFSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVMDASLKQLLTKNL 545
Query: 427 DEHLVYNC-----GKLTILDKLLPKLQEQESRVLIFSQMTR------MLDILEDYCLWRQ 475
+ H + + GKL +LDK+L +++ + ++F Q T+ + +ILED+ + ++
Sbjct: 546 ELHEILDVEIKASGKLHLLDKMLTHIKKNGLKAVVFYQATQTPEGLLLGNILEDF-VGQR 604
Query: 476 YKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNP 535
+ + +N I +N E S+ V +L TRA I L AD I++ S NP
Sbjct: 605 FGPKSYEHGIYSSKKNSAINNFNKE-SQCCVLLLETRACSQTIKLLRADAFILFGSSLNP 663
Query: 536 QMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLV 583
D++ +++ ++ ++FRL + TVEEK + A R +K V
Sbjct: 664 SHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAV 711
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 78.6 bits (185), Expect = 2e-14
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 14/228 (6%)
Query: 368 LSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLFDGA-EPGPPYTT 426
LS +Q E Y + L ++ K++ L+ L +RK C+HPY+ D + +
Sbjct: 486 LSDVQLEQYCQTLFSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVMDASLKQLLTKNL 545
Query: 427 DEHLVYNC-----GKLTILDKLLPKLQEQESRVLIFSQMTR------MLDILEDYCLWRQ 475
+ H + + GKL +LDK+L +++ + ++F Q T+ + +ILED+ + ++
Sbjct: 546 ELHEILDVEIKASGKLHLLDKMLTHIKKNGLKAVVFYQATQTPEGLLLGNILEDF-VGQR 604
Query: 476 YKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNP 535
+ + +N I +N E S+ V +L TRA I L AD I++ S NP
Sbjct: 605 FGPKSYEHGIYSSKKNSAINNFNKE-SQCCVLLLETRACSQTIKLLRADAFILFGSSLNP 663
Query: 536 QMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVERAEVKLRLDKLV 583
D++ +++ ++ ++FRL + TVEEK + A R +K V
Sbjct: 664 SHDVKHVEKIKIESCSERTKIFRLYSVCTVEEKALILARQNKRQNKAV 711
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 71.3 bits (167), Expect = 3e-12
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 9/140 (6%)
Query: 451 ESRVLIFSQMTRMLDILEDYCLWRQYKY------CRLDGQTPHEDRNRQIEEYNMEGSEK 504
+ +VL+FSQ L ++ + + R +K+ + G+ + R I E+N S+
Sbjct: 393 KEKVLVFSQYIDPLKLIMKHLVSR-FKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKA 451
Query: 505 FVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNT 564
VF+ ST+A GI+L A VI+ D WNP ++ QA+ RA+RIGQK+ V + L+ T
Sbjct: 452 KVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGT 511
Query: 565 VE-EKIVERAEVKLRLDKLV 583
E K ++A+ K R+ +LV
Sbjct: 512 PEGPKYCKQAQ-KDRISELV 530
Score = 46.8 bits (106), Expect = 7e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 257 MVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLP 308
+V+DEAH +N++S + + L + ++ R+LL+GTP QNN EL +L P
Sbjct: 186 LVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLARP 237
Score = 36.3 bits (80), Expect = 0.10
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 154 ILADEMGLGKTLQTISLL-GYMKHFKNVPGPHIVIVPKSTLTNWMNEFKKW 203
I++ G GKT TI L Y++ F + ++I P S L W EFKKW
Sbjct: 38 IMSHAPGTGKTRLTIIFLQAYLQCFPDCKP--VIIAPASLLLTWAEEFKKW 86
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1256
Score = 70.9 bits (166), Expect = 4e-12
Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 450 QESRVLIF----SQMTRMLDILEDYCLWRQYK-YCRLDGQTPHEDRNRQIEEYNMEGSEK 504
+ ++LIF + + L++ E+ W++ + L G +R R I+++ G +
Sbjct: 1071 KREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQS 1130
Query: 505 FVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNT 564
V + S A GI+LT+A VI+ DS+WNP QA+ RA R GQ+K V V++L++ T
Sbjct: 1131 RVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGT 1190
Query: 565 VEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEM 601
+EE R K + ++ S V+ +Q +++
Sbjct: 1191 LEEDKYRRTTWKEWVSSMIF-SEEFVEDPSQWQAEKI 1226
Score = 40.7 bits (91), Expect = 0.005
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 257 MVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPD-VFNSSD 315
+V+DE H ++ KS+L + L + + R+LL+GT QNN E + L P V
Sbjct: 846 LVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLV 905
Query: 316 DFDSWFNTNAA 326
+ D F TN A
Sbjct: 906 ELDKKFQTNQA 916
Score = 37.1 bits (82), Expect = 0.060
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 154 ILADEMGLGKTLQTISLLG-YMKHFKNVPGPH-IVIVPKSTLTNWMNEFKKW 203
+++ G GKT I+ L Y+K F PG +V+ PK+TL W EF KW
Sbjct: 709 VVSHTPGAGKTFLIIAFLASYLKIF---PGKRPLVLAPKTTLYTWYKEFIKW 757
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 70.9 bits (166), Expect = 4e-12
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 508 MLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEE 567
++S +AG LG+N+ +A VI+ D WNP + QA+DRAHRIGQ + V V R+ NTVEE
Sbjct: 511 LMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEE 570
Query: 568 KIVERAEVK 576
+I+ E K
Sbjct: 571 RILTLHERK 579
Score = 53.6 bits (123), Expect = 6e-07
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 17/167 (10%)
Query: 251 KFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPDV 310
+ W +V+DEAH IKN ++ +++ ++ R LTGTP++N + +L++ FL
Sbjct: 210 RVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHP 269
Query: 311 FNSSDDFDSWFNTNAALGDNQLVSRLHAVLRPFLLRRXXXXXXXXXXXXXXXXXXXGLSK 370
+ + F +L A+LR +LRR +
Sbjct: 270 YAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTKEWSFYRKL------------E 317
Query: 371 MQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLFDG 417
+ W + D G L +L++LR+ CNHP L +G
Sbjct: 318 LNSRWKFEEYAAD-----GTLHEHMAYLLVMLLRLRQACNHPQLVNG 359
Score = 41.5 bits (93), Expect = 0.003
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 135 YQVRGLNWMISLYENG---INGILADEMGLGKTLQTISLL------GYMKHFKNV---PG 182
+Q LNWM + + GILAD+ GLGKT+ TISL+ K K G
Sbjct: 56 HQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILLQKLKSQSKQRKRKGQNSG 115
Query: 183 PHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMI 242
+++ P S + W E K+ + ++ + T ++ +DV +T+Y ++
Sbjct: 116 GTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRT--KDPTEIAIYDVVMTTYAIV 173
Query: 243 IRE 245
E
Sbjct: 174 TNE 176
>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1261
Score = 67.7 bits (158), Expect = 4e-11
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 450 QESRVLIF----SQMTRMLDILEDYCLW-RQYKYCRLDGQTPHEDRNRQIEEYNMEGSEK 504
+ ++LIF + + ++ E+ W R + L G +R R I+++ G+
Sbjct: 1077 KREKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPS 1136
Query: 505 FVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNT 564
V + S A GI+LT+A VI+ DS+WNP QA+ RA R GQ+K V V++L++ T
Sbjct: 1137 RVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGT 1196
Query: 565 VEEKIVERAEVK 576
+EE R K
Sbjct: 1197 LEEDKYRRTTWK 1208
Score = 38.7 bits (86), Expect = 0.020
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 257 MVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPD-VFNSSD 315
+V+DE H ++ KS+L + L + + R+LL+GT QNN E + L P +
Sbjct: 852 LVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLM 911
Query: 316 DFDSWFNTN 324
+ D F TN
Sbjct: 912 ELDQKFKTN 920
Score = 37.9 bits (84), Expect = 0.034
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 154 ILADEMGLGKTLQTISLL-GYMKHFKNVPGPH-IVIVPKSTLTNWMNEFKKW 203
+++ G GKT I+ L Y+K F PG +V+ PK+TL W EF KW
Sbjct: 714 VISHSPGAGKTFLIIAFLTSYLKLF---PGKRPLVLAPKTTLYTWYKEFIKW 762
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 66.9 bits (156), Expect = 6e-11
Identities = 34/126 (26%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 452 SRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLST 511
+++++F+ ++LD ++++ + + R+DG T DR ++ + SE + ++
Sbjct: 555 TKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFS-SEVKIAIIGV 613
Query: 512 RAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVE 571
AGG+G++ ++A V+ + P + LQA DRAHR GQ V V+ +T++E +
Sbjct: 614 EAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQ 673
Query: 572 RAEVKL 577
KL
Sbjct: 674 NLNKKL 679
Score = 63.3 bits (147), Expect = 8e-10
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
Query: 112 SKQKTIFRFEASPHYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 171
+++K E P + N + +Q+ GL + + G +ADEMGLGKTLQ I++
Sbjct: 185 TEEKVEQLIETLPRKLVNA-LLPFQLDGLRFGL---RRGGRCFIADEMGLGKTLQAIAIA 240
Query: 172 GYMKHFKNVPGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGN 231
G G +V+ P W E ++W PS CL D
Sbjct: 241 GCFIS----EGSILVVCPAVLRFTWAEELERWLPS----CLPSDVHLVFGHQDNPAYLPR 292
Query: 232 W-DVCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSK-----LSELLREFKSMNR- 284
W V + SY+M+ ++ + W +++DE+H ++ K K + +L + +
Sbjct: 293 WPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHI 352
Query: 285 LLLTGTPLQNNLHELWALLNFLLP 308
+LL+GTP + +++ +N L P
Sbjct: 353 ILLSGTPSVSRPFDIFHQINMLWP 376
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 64.1 bits (149), Expect = 5e-10
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 436 KLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCL----WRQYKYC-RLDGQTPHEDR 490
K+ LL + ++L+FSQ + LE WR K + G + +E R
Sbjct: 621 KMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQR 680
Query: 491 NRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQ 550
+E +N E VF S +A G GI+L A V+I D NP + QA+ RA+R GQ
Sbjct: 681 EWSMERFN-NSLEAKVFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQ 739
Query: 551 KKQVRVFRLITDNTVEEKIVERAEVKLRLDKL 582
K++V ++L+ ++ EE+ E K + K+
Sbjct: 740 KRKVYAYKLVAADSPEEENYETCTRKEMMSKM 771
Score = 56.0 bits (129), Expect = 1e-07
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 18/195 (9%)
Query: 131 EMRDYQVRGLNWMIS-LYENGING-ILADEMGLGKTLQTISLLGYMKHFKNVPGPHIVIV 188
EMR +Q G ++ + L + G ILA G GKT IS L P +V++
Sbjct: 264 EMRPHQTEGFRFLCNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARP-LVVL 322
Query: 189 PKSTLTNWMNEFKKW----CP-----SLKAVCLIGDQETRNTFIRET--LMPGNWD---- 233
PK + +W EF W P S+KA + +I+E L G
Sbjct: 323 PKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILFLGYQQFTRI 382
Query: 234 VCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQ 293
+C ++E + + +++DE H +N+++ + L K+ +++LTGT Q
Sbjct: 383 ICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQ 442
Query: 294 NNLHELWALLNFLLP 308
NN+ E++ +L+ + P
Sbjct: 443 NNVEEVFNILDLVRP 457
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 63.7 bits (148), Expect = 6e-10
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 453 RVLIFSQMTRMLDILEDYCL----WRQYKYCR-LDGQTPHEDRNRQIEEYNMEGSEKFVF 507
++L+FSQ L LE W+ K L G T E R +E +N K +F
Sbjct: 712 KLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAK-IF 770
Query: 508 MLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEE 567
S +A G GI+L A ++I D NP + QA+ RA R GQKK V +RLI ++ EE
Sbjct: 771 FGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEE 830
Query: 568 K 568
+
Sbjct: 831 E 831
Score = 54.4 bits (125), Expect = 4e-07
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 24/203 (11%)
Query: 125 HYIKNGEMRDYQVRGLNWMIS-LYENGING-ILADEMGLGKTLQTISLLGYMKHF--KNV 180
H EM+ +Q+ G ++ S L + G I+A G GKT IS +M+ F K
Sbjct: 343 HPTHAAEMKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIIS---FMQSFLAKYP 399
Query: 181 PGPHIVIVPKSTLTNWMNEFKKW----CPSLKAVCLIGDQETRNTFI-------RETLMP 229
+V++PK L W EF +W P L + + I + L
Sbjct: 400 QAKPLVVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSILFL 459
Query: 230 GNWD----VCITSYEMIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRL 285
G VC + + + ++ + K + +++DE H +NE + L + L + ++ ++
Sbjct: 460 GYQQFSTIVCDDTTDSLSCQEILLKVPS--ILILDEGHTPRNEDTNLLQSLAQVQTPRKV 517
Query: 286 LLTGTPLQNNLHELWALLNFLLP 308
+L+GT QN++ E++ +LN + P
Sbjct: 518 VLSGTLYQNHVKEVFNILNLVRP 540
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 62.9 bits (146), Expect = 1e-09
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 18/187 (9%)
Query: 446 KLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDG----QTP------HEDRNRQIE 495
K + +++VL+FS +LD+LE R+ G QT E ++
Sbjct: 1428 KSSDPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTN 1487
Query: 496 EYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVR 555
+ E V +L + G G+NL A VI+ + NP + QA+ R HRIGQ+K
Sbjct: 1488 SHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTL 1547
Query: 556 VFRLITDNTVEEKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMIRHGANHVFAS 615
V R + TVEE I KL +K S ++N N+D+ ++ +FAS
Sbjct: 1548 VHRFLVSGTVEESI-----YKLNRNKNTNLSS--FSSRNTKNQDQQFLTLK-DLESLFAS 1599
Query: 616 KDSEVTD 622
+E +
Sbjct: 1600 PTAETAE 1606
Score = 43.2 bits (97), Expect = 0.001
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 252 FNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPDVF 311
F WR + +DEA +++ + +E+ + +R +TGTP+Q L +L+ LL FL + F
Sbjct: 583 FWWR-ICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPF 641
Query: 312 NSS 314
+ S
Sbjct: 642 DVS 644
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
pombe}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 58.0 bits (134), Expect = 3e-08
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 453 RVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTR 512
+VLIFSQ + ++E K+ ++ +P + N+ + + +L
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKM--YSPMQSYNKMKALAMFQNDADCMALLMDG 1252
Query: 513 AGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITDNTVEEKIVER 572
+G LG++L+ V + + W+ ++ Q + RAHR+G K+ + V L T+EE+++
Sbjct: 1253 SGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMMRF 1312
Query: 573 AEVKLRLDKLVIQSGRLVDTKNQLNK 598
E + D+L+ SG ++ K + +
Sbjct: 1313 LEDAEKSDRLL--SGDYIEAKQETTR 1336
Score = 45.2 bits (102), Expect = 2e-04
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 185 IVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYEMII- 243
+++VP + + +W+ + +K S + L+ + + ++DV IT++ +
Sbjct: 757 LIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIE---LSPHSLAWDYDVVITTFSRLSA 813
Query: 244 ----REKSVFKKFNWRYMVIDEAHRIKNEKSKLS--ELLREFKSMNRLLLTGTPLQN--- 294
R+KS + +W +++DE H + + S + ++ + NR LLTGTP N
Sbjct: 814 EWNPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTPN 873
Query: 295 -NLHELWALLNFLLPDVFNSSDDF 317
L + LL FL +V+ + F
Sbjct: 874 SQLSHIQPLLKFLHEEVYGENPKF 897
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 38.7 bits (86), Expect = 0.020
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 7/148 (4%)
Query: 435 GKLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQI 494
G+ +I+ L+ K + + ++F+Q R D L + L + YK L G R R +
Sbjct: 346 GRASIIGPLV-KEHGKGGKCIVFTQTKRDADRLA-FGLAKSYKCEALHGDISQAQRERTL 403
Query: 495 EEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQV 554
+ +G+ F +++T G+++ + D+VI Y+ N + + R R G KK
Sbjct: 404 AGFR-DGN--FSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAG-KKGS 459
Query: 555 RVFRLITDNTVEEKIVERAEVKLRLDKL 582
+ D T K++E+ EV R ++L
Sbjct: 460 AILIHGQDQTRAVKMIEK-EVGSRFNEL 486
>At3g32330.1 68416.m04125 DNA repair protein-related weak similarity
to SP|P41410 DNA repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}
Length = 327
Score = 37.1 bits (82), Expect = 0.060
Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 124 PHYIKNGEMRDYQVRGLNWMIS--LYENGINGILADEMGLGKTLQTISLL-GYMKHFKNV 180
PH M+ + LN++ + EN I+A KT IS + GY++ N
Sbjct: 15 PHPFHKMIMKPHHFEILNFLYKNLVVENSNGCIIAQTPLSEKTFLMISFIYGYLEKHPN- 73
Query: 181 PGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYE 240
+ ++PK L + K+W + ++ +G ++ N + + D C +
Sbjct: 74 -SKSLFVLPKWVLN--LEVLKRWIKTW-SIIFLGAKQFSN-IVSDNSGAEASDSC---RD 125
Query: 241 MIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELW 300
+++ SV +V D +NE +++ K+ +++LLTG+ QNN+ E++
Sbjct: 126 ILLNILSV--------VVFDRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVF 177
Query: 301 ALLNFLLPD 309
+L+ P+
Sbjct: 178 NILDVAFPE 186
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 37.1 bits (82), Expect = 0.060
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 452 SRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLST 511
++ +IF R +D L + + + G P ++R+ + E+ S +++T
Sbjct: 275 TQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSR---VLITT 331
Query: 512 RAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQK 551
GI++ +VI YD N ++ + + R+ R G+K
Sbjct: 332 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 371
>At2g38090.1 68415.m04676 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 36.7 bits (81), Expect = 0.079
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWER 849
WT+ + QF+ +KYG+ D NIA++ V +TP +V ++ ++ R
Sbjct: 143 WTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIR 189
>At5g05790.1 68418.m00637 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 277
Score = 36.3 bits (80), Expect = 0.10
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKDVEG-KTPEEVMEYSAVFWER 849
WT+ + +F+ KYG+ D NI+++ G KTP +V ++ +++R
Sbjct: 133 WTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKYYQR 179
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 36.3 bits (80), Expect = 0.10
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 448 QEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVF 507
+ Q++RVL+F+ + LE + R +K + G +R R + + EGS
Sbjct: 363 KSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK-EGS--CPL 419
Query: 508 MLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVF 557
+++T G+++ +VVI Y + + + R R G+K F
Sbjct: 420 LVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469
>At3g11280.2 68416.m01372 myb family transcription factor contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 263
Score = 35.9 bits (79), Expect = 0.14
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWER 849
WT+ + +F+ KYG+ D NI+++ V KTP +V ++ +++R
Sbjct: 129 WTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQR 175
>At3g11280.1 68416.m01371 myb family transcription factor contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 263
Score = 35.9 bits (79), Expect = 0.14
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWER 849
WT+ + +F+ KYG+ D NI+++ V KTP +V ++ +++R
Sbjct: 129 WTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQR 175
>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 1165
Score = 35.1 bits (77), Expect = 0.24
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 611 HVFASKDSEVTDEDIDTILAKGESKTEELKQKLESLGESSLRAFSMDTPGATTDSVYQFE 670
H + ++ I + A +++ + K+K+ S S DT GA TD+ +
Sbjct: 292 HQVKEEPDTSAEKSIPDLSAPQKNRAPKKKRKVVEESSKSFEVDSSDTAGAKTDTNEHNK 351
Query: 671 GEDYREKQKVI-----PMGSWIEPPKRERKANYAVDAYFREALRVSEPKAPKV 718
+ R+K +V G ++ PP ++ K+ + ++ + + K+PK+
Sbjct: 352 RKSSRKKPQVSYAKEGSDGDFVSPPNKKTKSGFEFESEPNKKQTAEDNKSPKL 404
>At3g32280.1 68416.m04116 hypothetical protein
Length = 474
Score = 34.7 bits (76), Expect = 0.32
Identities = 41/189 (21%), Positives = 85/189 (44%), Gaps = 22/189 (11%)
Query: 124 PHYIKNGEMRDYQVRGLNWMIS--LYENGINGILADEMGLGKTLQTISLL-GYMKHFKNV 180
PH + M+ + LN++ + EN I+A KT IS + GY++ N
Sbjct: 304 PHPLHRMIMKPHHFEILNFLYKNLVVENSNGCIIAQTPLSEKTFLMISFIYGYLEKHPN- 362
Query: 181 PGPHIVIVPKSTLTNWMNEFKKWCPSLKAVCLIGDQETRNTFIRETLMPGNWDVCITSYE 240
+ ++PK L N K+W + +++ +G ++ N + + D C +
Sbjct: 363 -SKSLFVLPKWVL----NGLKRWIKT-RSIIFLGAKQFSN-IVSDNSGAEASDSC---RD 412
Query: 241 MIIREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELW 300
+++ SV +V D +NE +++ K+ +++LLTG+ +NN+ E++
Sbjct: 413 ILLNILSV--------VVFDRGTDPRNEMMCFLKVVSRIKTPHKVLLTGSLYKNNIKEVF 464
Query: 301 ALLNFLLPD 309
+ + P+
Sbjct: 465 NIFDVAFPN 473
>At5g01200.1 68418.m00025 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 267
Score = 33.9 bits (74), Expect = 0.56
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWER 849
WT+ + +F+ +KYG+ D NIAK V +TP +V ++ ++ R
Sbjct: 148 WTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLR 194
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 33.9 bits (74), Expect = 0.56
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 502 SEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLIT 561
S K +L+T G+++ + D+VI YD +P+ + + R R G+ T
Sbjct: 350 SGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITET 409
Query: 562 DNTVEEKIVERAEVKLR-LDKLVIQSGRLVDTKNQLNKDEMLNMIRHGANHVFASKDSEV 620
D + KI E K+ +K VI V ++ + M+ M+ +G F K +
Sbjct: 410 DVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNG----FEDKVKDR 465
Query: 621 TDEDIDTILAKGESKTEELKQK 642
T+ KG K +QK
Sbjct: 466 RKLKRKTLADKGLLKKRGKRQK 487
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 33.5 bits (73), Expect = 0.74
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 472 LWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDS 531
L+ + K RL G EDR + +EK +LST G++ +I YD
Sbjct: 370 LFLKCKTFRLHGSMEQEDRRSAFGTFK---TEKQAVLLSTDVAARGLDFPKVRCIIQYDC 426
Query: 532 DWNPQMDLQAMDRAHRIGQKKQVRVF 557
+ + R RIG+K + +F
Sbjct: 427 PGEATEYVHRVGRTARIGEKGEALLF 452
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 33.1 bits (72), Expect = 0.98
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 443 LLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGS 502
LL LQ+ VLIF + +D + +Y L + + + G EDR I + +
Sbjct: 389 LLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF--KAG 446
Query: 503 EKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQ 550
+K V +++T G++ VI YD M + + HRIG+
Sbjct: 447 KKDV-LVATDVASKGLDFPDIQHVINYD------MPAEIENYVHRIGR 487
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 33.1 bits (72), Expect = 0.98
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 436 KLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIE 495
K TIL L+ + + + ++F+Q R D + L L G R R +
Sbjct: 337 KRTILSDLIT-VYAKGGKTIVFTQTKRDADEVS-LALSNSIATEALHGDISQHQRERTLN 394
Query: 496 EYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQK 551
+ +G KF +++T G+++ + D+VI Y+ +P+ + R R G++
Sbjct: 395 AFR-QG--KFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
>At3g31900.1 68416.m04029 hypothetical protein
Length = 393
Score = 33.1 bits (72), Expect = 0.98
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 266 KNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWALLNFLLPD 309
+NE +++ K+ +++LLTG+ QNN+ E++ +L+ P+
Sbjct: 324 RNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFNILDVAFPE 367
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 32.7 bits (71), Expect = 1.3
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 551 KKQVRVFRLITDNTVE-EKIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEMLNMIRHGA 609
KK +++ D++VE E + E +++KLR +SG + L N + H
Sbjct: 304 KKVIQLKLSRVDSSVEWEPLREGSKIKLRT-----RSGNYLRGNGGL--PPWRNSVTHDV 356
Query: 610 NHVFASKDSEVTDEDIDTILAKGESKTEELK 640
H+ A++DS D D+ IL E KTE K
Sbjct: 357 PHLSATQDSISWDVDVVEILTDSEFKTESAK 387
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 32.3 bits (70), Expect = 1.7
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 488 EDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHR 547
E+R + + + EG ++ +++T G GI++ ++VI YD + L + RA R
Sbjct: 325 EERLTRYKSFK-EGHKRI--LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
Query: 548 IGQKKQVRVF-RLITDNTVEEKIVERAEVKLR 578
G K F +D+ V ++ ER EV ++
Sbjct: 382 FGTKGLAITFVASASDSEVLNQVQERFEVDIK 413
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 32.3 bits (70), Expect = 1.7
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 488 EDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHR 547
E+R + + + EG ++ +++T G GI++ ++VI YD + L + RA R
Sbjct: 242 EERLTRYKSFK-EGHKRI--LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 298
Query: 548 IGQKKQVRVF-RLITDNTVEEKIVERAEVKLR 578
G K F +D+ V ++ ER EV ++
Sbjct: 299 FGTKGLAITFVASASDSEVLNQVQERFEVDIK 330
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 32.3 bits (70), Expect = 1.7
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 488 EDRNRQIEEYNMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHR 547
E+R + + + EG ++ +++T G GI++ ++VI YD + L + RA R
Sbjct: 325 EERLTRYKSFK-EGHKRI--LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381
Query: 548 IGQKKQVRVF-RLITDNTVEEKIVERAEVKLR 578
G K F +D+ V ++ ER EV ++
Sbjct: 382 FGTKGLAITFVASASDSEVLNQVQERFEVDIK 413
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 32.3 bits (70), Expect = 1.7
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 440 LDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNM 499
L KLL +L E+ + ++F + D + Y+ L G E R +E +
Sbjct: 567 LQKLLDELGEKTA--IVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFR- 623
Query: 500 EGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRL 559
++++ +++T G GI++ VI YD + +M + R R G+ F
Sbjct: 624 --AKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681
Query: 560 ITDNTV 565
+ D V
Sbjct: 682 LHDTEV 687
>At5g58900.1 68418.m07379 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 288
Score = 31.9 bits (69), Expect = 2.3
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWER 849
WT+ + F+ +KYG+ D NI+++ V +TP +V ++ ++ R
Sbjct: 143 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIR 189
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 31.9 bits (69), Expect = 2.3
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 443 LLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGS 502
LL LQ+ VLIF + +D + +Y L + + + G EDR+ I + +
Sbjct: 340 LLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLF--KAG 397
Query: 503 EKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQ 550
+K V +++T G++ VI YD + + + R R G+
Sbjct: 398 KKDV-LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGK 444
>At5g06160.1 68418.m00687 splicing factor-related contains some
similarity to splicing factor SP:Q12874 from [Homo
sapiens]
Length = 504
Score = 31.1 bits (67), Expect = 3.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 834 KTPEEVMEYSAVFWERCHELQDIDRIMGQI 863
K E ++EY F++R LQD+DRI+ ++
Sbjct: 183 KYMEALLEYLVYFFQRTEPLQDLDRILSKV 212
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 31.1 bits (67), Expect = 3.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 618 SEVTDEDIDTILAKGESKTEELKQKLESLGESSLRAFSMDTPGATTDSVYQFEGEDYREK 677
++ TD +ID +GES+T+ +K S E+++ DT T ++V E
Sbjct: 256 TDSTDNEIDDSDEEGESETQCSAEKTGSETEANVEEMRADT-NVTMEAVQNESRNQMEEL 314
Query: 678 QKVIPMGSWIEPPKRE 693
+ I MG +E K+E
Sbjct: 315 ENEIEMG--VEDEKKE 328
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 31.1 bits (67), Expect = 3.9
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 488 EDRNRQIEEY-NMEGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAH 546
E R ++E+ + + E +F++ T GI+ + D V+++D +P ++ + R
Sbjct: 677 ESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTA 736
Query: 547 RIGQKKQVRVFRLITDNTV--EEKIVERAE 574
R G + + + F + V +I+ER E
Sbjct: 737 R-GARGKGKAFIFVVGKQVGLARRIIERNE 765
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 30.7 bits (66), Expect = 5.2
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 436 KLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIE 495
K+ L+ L KLQ +S +IF +++L Y + + + RNR
Sbjct: 355 KIHCLNTLFSKLQINQS--IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFH 412
Query: 496 EYNMEGSEKFVFM-LSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIG 549
++ V L TR GI++ + +VVI +D N + L + R+ R G
Sbjct: 413 DFRNGACRNLVCTDLFTR----GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 30.7 bits (66), Expect = 5.2
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 436 KLTILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIE 495
K+ L+ L KLQ +S +IF +++L Y + + + RNR
Sbjct: 355 KIHCLNTLFSKLQINQS--IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFH 412
Query: 496 EYNMEGSEKFVFM-LSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIG 549
++ V L TR GI++ + +VVI +D N + L + R+ R G
Sbjct: 413 DFRNGACRNLVCTDLFTR----GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 30.7 bits (66), Expect = 5.2
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 455 LIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAG 514
+IF R +D L D R + G R+ + E+ GS + +++T
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR-SGSSRV--LITTDLL 338
Query: 515 GLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQK 551
GI++ +VI +D P+ L + R+ R G+K
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRK 375
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 30.7 bits (66), Expect = 5.2
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 455 LIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAG 514
+IF R +D L D R + G R+ + E+ GS + +++T
Sbjct: 284 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR-SGSSRV--LITTDLL 340
Query: 515 GLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQK 551
GI++ +VI +D P+ L + R+ R G+K
Sbjct: 341 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRK 377
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 30.7 bits (66), Expect = 5.2
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 455 LIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNMEGSEKFVFMLSTRAG 514
+IF R +D L D R + G R+ + E+ GS + +++T
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR-SGSSRV--LITTDLL 338
Query: 515 GLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQK 551
GI++ +VI +D P+ L + R+ R G+K
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRK 375
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 30.3 bits (65), Expect = 6.9
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWERCHEL 853
WT+ + F+ +KYG+ D +I+++ V +TP +V ++ ++ R + +
Sbjct: 120 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSM 170
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 30.3 bits (65), Expect = 6.9
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 440 LDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNM 499
L+++L + QE+ S+V+IF R+ D L + R + + G +R+ + ++
Sbjct: 670 LEQIL-RSQERGSKVIIFCSTKRLCDHLA-RSVGRHFGAVVIHGDKTQGERDWVLNQFR- 726
Query: 500 EGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIG 549
S K +++T G+++ VVI YD + + + R R G
Sbjct: 727 --SGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG 774
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.3 bits (65), Expect = 6.9
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKDVEGKTPEEVMEYSAVFWERCHELQDIDRI-MGQ 862
WT+ + N+FI+A YGR + I + V KT ++ ++ F+ + + + + MGQ
Sbjct: 27 WTEEEHNRFIEALRLYGR-AWQKIEEHVATKTAVQIRSHAQKFFSKVEKEAEAKGVAMGQ 85
>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
family protein
Length = 990
Score = 30.3 bits (65), Expect = 6.9
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 575 VKLRLDKLVIQSGRLVDTKNQLNKDEMLNMIRHGANHVFASKDSEVTDEDIDT 627
VK+RL SGRLV+ K++L + E+ I G H S++TD + T
Sbjct: 690 VKIRLGPFKGYSGRLVEVKDKLVRVELEAKIVTGKLHFERKAISDMTDNVVAT 742
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 30.3 bits (65), Expect = 6.9
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 442 KLLPKLQE--QESRVLIFSQMTRMLDILEDYCLWRQYKYCRLDGQTPHEDRNRQIEEYNM 499
+LL L E ++ ++L+F Q D L + Y L G DR I ++
Sbjct: 765 RLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFK- 823
Query: 500 EGSEKFVFMLSTRAGGLGINLTSADVVIIYDSDWNPQMDLQAMDRAHRIGQK 551
++ +++T G+++ ++V+ +D+ + + + + R R G+K
Sbjct: 824 --NDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRK 873
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.9 bits (64), Expect = 9.1
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 568 KIVERAEVKLRLDKLVIQSGRLVDTKNQLNKDEM-LNMIRHGANHVFASKDSE------- 619
K +E AE KL LD QS L +TK + + ++ + ++ + + S+DS
Sbjct: 58 KNLEAAEKKL-LDSFKDQSRELEETKALVEESKVEIASLKEKIDTSYNSQDSSEEDEDDS 116
Query: 620 -VTDEDIDTILAKGESKTEELKQKLESLGESSLR 652
V D DI+++ + ES E L Q E+ SSL+
Sbjct: 117 SVQDFDIESLKTEMESTKESLAQAHEAAQASSLK 150
>At1g49010.1 68414.m05495 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 314
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 804 WTKRDFNQFIKANEKYGRDDIENIAKD-VEGKTPEEVMEYSAVFWERCHEL 853
WT+ + F+ +K+G+ D +I+++ V +TP +V ++ ++ R + +
Sbjct: 136 WTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSM 186
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,973,078
Number of Sequences: 28952
Number of extensions: 918888
Number of successful extensions: 2921
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2649
Number of HSP's gapped (non-prelim): 173
length of query: 1026
length of database: 12,070,560
effective HSP length: 88
effective length of query: 938
effective length of database: 9,522,784
effective search space: 8932371392
effective search space used: 8932371392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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