Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.48 
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.48 
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)                     30   0.63 
SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.63 
SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)            27   3.4  
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)                  26   7.8  

>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 63  SNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFHARY 102
           S+L  +    V   +GN  L   DTGS  TS+ ++F+ RY
Sbjct: 25  SDLVGEANECVAFADGNAGLALLDTGSQVTSVSESFYKRY 64


>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1292

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 63  SNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFHARY 102
           S+L  +    V   +GN  L   DTGS  TS+ ++F+ RY
Sbjct: 300 SDLVGEANECVAFADGNAGLALLDTGSQVTSVSESFYKRY 339


>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
          Length = 529

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 3   KNARPVSVTICEYSNNGNSRREPTKLDFLGTDM-PDGILSDGNDIPITNRLQSELALTLS 61
           K   P+  +   +       R    L+ LGT   PD      +D+ +TN      AL   
Sbjct: 184 KQQSPIQQSKLVHDQTRPRSRSCGALNVLGTSRDPDSTRGSNDDLSLTNSTSEFHALREL 243

Query: 62  RSNLRKKTEALVKSINGN-INLNFD-DTGSDSTSIDK 96
              L+ + E L+ +IN   + L+ D D G  +T + K
Sbjct: 244 LLTLKNRKELLMSNINAQVVKLHSDKDAGRLNTLLSK 280


>SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 76  INGNINLNFDDTGSDSTSIDKNFHARYG 103
           +NG+IN N+D  G D  + D N    YG
Sbjct: 170 LNGDINANYDAYGDDDDNDDNNLDDDYG 197


>SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 13  CEYSNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKT-EA 71
           C Y+      R+   +    + + + ++ +G+D+ +   +  ++A+T+ +S ++ KT + 
Sbjct: 63  CGYTEQDEHVRDRIVIGCKSSKLRENLIQEGSDLTLEKAI--DIAITMEQSQIQLKTMKE 120

Query: 72  LVKSINGNINLNFDDTGSDST 92
           + KS   ++    DDT  + T
Sbjct: 121 MCKSKVTSVKCVDDDTTDERT 141


>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
          Length = 441

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 11/67 (16%)

Query: 1   MKKNARPVSVTICEYSNN---GNSRREPTKLDFLGTDM----PDGIL-SDGN---DIPIT 49
           + KN  P++VTI +YS N    NS   P+++D     +    PD    SDG+   D P +
Sbjct: 242 LSKNTSPIAVTIRQYSPNFGRRNSDHVPSQVDSSRKSVVSFSPDSANGSDGSINPDSPNS 301

Query: 50  NRLQSEL 56
           +R QS++
Sbjct: 302 SRRQSDM 308


>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
          Length = 916

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 54  SELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFHARYGNN 105
           SEL   L  +NL  K +  V ++    N N +D+G DS   ++N H   G++
Sbjct: 121 SELLAKLKENNLELK-DVYVIALQ-RANENEEDSGEDSEEEEENGHLMNGDS 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,842,223
Number of Sequences: 59808
Number of extensions: 140759
Number of successful extensions: 262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 55 (26.2 bits)