Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
(124 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 36 0.008
At1g01420.1 68414.m00057 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.30
At1g01390.1 68414.m00054 UDP-glucoronosyl/UDP-glucosyl transfera... 30 0.39
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 29 0.68
At4g20780.1 68417.m03017 calcium-binding protein, putative simil... 29 1.2
At3g20040.1 68416.m02535 hexokinase, putative similar to hexokin... 28 1.6
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ... 28 1.6
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 28 1.6
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 28 1.6
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 2.1
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 2.1
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa... 27 2.8
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa... 27 2.8
At4g20850.1 68417.m03025 subtilase family protein contains simil... 27 2.8
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 27 3.7
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 27 4.8
At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase, pu... 27 4.8
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 26 6.4
At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B... 26 8.4
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 35.9 bits (79), Expect = 0.008
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 7 PVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILS----DGNDI-PITNRLQSELALTLS 61
P V + S G ++ + ++ F T +P+G+ S G+D P+ NR+QSELA +++
Sbjct: 435 PSGVNLHAVSRRGGAQEQTSQPQFSRTGLPEGVSSRNTQHGSDAQPVVNRVQSELATSIA 494
Query: 62 RS 63
S
Sbjct: 495 AS 496
>At1g01420.1 68414.m00057 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 41 SDGNDIPITNRLQSELALTLSRSN--LRKKTEALVKSINGNINLNFDDTGSDSTSIDKNF 98
+D +D+P T R+++ ++LT++RSN LR+ +L L D G+D+ + F
Sbjct: 71 ADLSDVPSTARIETRISLTVTRSNPALRELFGSLSAEKRLPAVLVVDLFGTDAFDVAAEF 130
Query: 99 H 99
H
Sbjct: 131 H 131
>At1g01390.1 68414.m00054 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 30.3 bits (65), Expect = 0.39
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 9 SVTICEYSNNGNSRREPTKLDFLGTDMPDGIL--SDGNDIPITNRLQSELALTLSRSN-- 64
+VT+ S+ + + L+ L + + L +D +D+P T R+++ LT++RSN
Sbjct: 37 TVTMIISGETSPSKAQRSVLNSLPSSIASVFLPPADLSDVPSTARIETRAMLTMTRSNPA 96
Query: 65 LRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFH 99
LR+ +L + L D G+D+ + +FH
Sbjct: 97 LRELFGSLSTKKSLPAVLVVDMFGADAFDVAVDFH 131
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 59 TLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFH 99
TL RS L KK E K L + TGSD+T D + H
Sbjct: 87 TLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDATESDMHIH 127
>At4g20780.1 68417.m03017 calcium-binding protein, putative
similar to SP|Q09011 Calcium-binding protein CAST
{Solanum tuberosum}; contains INTERPRO:IPR002048
calcium-binding EF-hand domain
Length = 191
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 54 SELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNF 98
+ L L S+L+ E+ ++ GN LNFDD S ++D +F
Sbjct: 55 TRLGLNADLSDLKSTVESYIQP--GNTGLNFDDFSSLHKTLDDSF 97
>At3g20040.1 68416.m02535 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 488
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 29 DFLGTDMPDGILSDGNDIPITNRLQSELALTLS 61
DFL + + I +GND ++ L+ ELA T S
Sbjct: 145 DFLASSLQRFIEKEGNDFSLSQPLKRELAFTFS 177
>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
Pfam domain PF03107: DC1 domain
Length = 578
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 21 SRREPTKLDFLGTDMPDGILS-DGNDIPITNRLQSELALTLSRSNLRKKTEALVKSI 76
+RR T L T D ++S DGN +P++ + L S ++ RK TE K +
Sbjct: 170 ARRGQTLRSVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLV 226
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 29 DFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFD-DT 87
D L D+ LSD + + I L+ R N+R+K + L F D
Sbjct: 397 DLLNRDISSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTAVATRELTFPVDE 456
Query: 88 GSDSTSIDKNFHARYG 103
+ S+ + FH YG
Sbjct: 457 RNTQKSVVEYFHETYG 472
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 29 DFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFD-DT 87
D L D+ LSD + + I L+ R N+R+K + L F D
Sbjct: 395 DLLNRDISSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTAVATRELTFPVDE 454
Query: 88 GSDSTSIDKNFHARYG 103
+ S+ + FH YG
Sbjct: 455 RNTQKSVVEYFHETYG 470
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 7 PVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILS-----DGNDI-PITNRLQSELALTL 60
P V + S G+SR + F G+ + +G S +G D P+ NR+ SELA ++
Sbjct: 489 PGGVNLYGVSARGDSRDRILQSRFAGSGLAEGRSSRNTQHEGADAQPVVNRIPSELASSI 548
Query: 61 SRSNL 65
+ + L
Sbjct: 549 AAAEL 553
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 7 PVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILS-----DGNDI-PITNRLQSELALTL 60
P V + S G+SR + F G+ + +G S +G D P+ NR+ SELA ++
Sbjct: 489 PGGVNLYGVSARGDSRDRILQSRFAGSGLAEGRSSRNTQHEGADAQPVVNRIPSELASSI 548
Query: 61 SRSNL 65
+ + L
Sbjct: 549 AAAEL 553
>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 77 NGNINLNFDDTGSDSTSIDKNFHARY 102
N +N++ D G+DS ID++ H R+
Sbjct: 92 NDEVNVSDDVDGNDSVDIDRHHHRRH 117
>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 356
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 77 NGNINLNFDDTGSDSTSIDKNFHARY 102
N +N++ D G+DS ID++ H R+
Sbjct: 92 NDEVNVSDDVDGNDSVDIDRHHHRRH 117
>At4g20850.1 68417.m03025 subtilase family protein contains
similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
(TPP-II) (Tripeptidyl aminopeptidase)
(Swiss-Prot:P29144) [Homo sapiens]
Length = 1380
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 4 NARPVSVTICEYSNNGNSRREPTKLDF------LGTDMPDGILSDGNDIPITNRLQSELA 57
+ + + + I ++ ++G REPT +DF +G D + +L DG++ PI ++ LA
Sbjct: 842 SGQTMELAIAQFWSSGLGSREPTIVDFEIEFHGVGVDKEE-LLLDGSEAPIKVEAEALLA 900
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 59 TLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFH 99
TL RS L KK E K L + TGSD+ D + H
Sbjct: 87 TLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIH 127
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 38 GILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNIN 81
G++S NDI I R E+A L+ K + L++ + G ++
Sbjct: 481 GVISMANDIDIRKRPMIEVAFKDLSITLKGKNKHLMRCVTGKLS 524
>At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase,
putative / G6PD, putative similar to SP|Q43839
Glucose-6-phosphate 1-dehydrogenase, chloroplast
precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
contains Pfam profiles PF02781: Glucose-6-phosphate
dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
dehydrogenase NAD binding domain; gc exon splice site at
20574 is based on protein alignment, and is not
confirmed experimentally
Length = 625
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 29 DFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNL 65
+ LGTD+ DG + G+ P++ +L +L+ R++L
Sbjct: 118 NILGTDLNDGFHNVGDLPPVSKQLSDDLSDVRRRASL 154
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 7 PVSVTICEYSNNGNSRREPTKLDF 30
P+ + CE SN+ N + P +L++
Sbjct: 290 PIEIRFCEPSNSTNQTKSPPRLNY 313
>At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B29)
strong similarity to gb|X97864 cytochrome P450 and
identical to Cytochrome P450 71B29
(SP:Q9SAE4)[Arabidopsis thaliana];PF|00067 Cytochrome
P450 family
Length = 490
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 39 ILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFD 85
I + ND+ + +L +ELALT S NL+K LV SI I F+
Sbjct: 140 IREEENDL-LVKKL-TELALTRSPVNLKKTLFTLVGSIVCRIGFGFN 184
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.129 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,803
Number of Sequences: 28952
Number of extensions: 99869
Number of successful extensions: 216
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 19
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)
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