GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
         (124 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.092
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.092
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   4.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   8.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   8.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
          transporter protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.092
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 65 LRKKTEALVKSINGNINLNFDDTGSDSTSID 95
          +  +TE L+  +   IN N  D+ S +TSID
Sbjct: 1  MENETEPLLSGVVSQINGNSGDSTSSATSID 31


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
          transporter white protein.
          Length = 669

 Score = 26.2 bits (55), Expect = 0.092
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 65 LRKKTEALVKSINGNINLNFDDTGSDSTSID 95
          +  +TE L+  +   IN N  D+ S +TSID
Sbjct: 1  MENETEPLLSGVVSQINGNSGDSTSSATSID 31


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
          orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 47 PITNRLQSELALTLSRSN 64
          PI+NR++ E+A  ++  N
Sbjct: 82 PISNRIRHEMATPMATMN 99


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
          castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 23 REPTKLDFLGTDMPDGILSDGNDIP 47
          RE   +D       D +LS GN+ P
Sbjct: 9  RESPNIDHNSCSSDDTVLSVGNENP 33


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 38  GILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVK 74
           G++S G  + +T++L+ +        +L ++ + +VK
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVK 122


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 38  GILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVK 74
           G++S G  + +T++L+ +        +L ++ + +VK
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVK 122


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 38  GILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVK 74
           G++S G  + +T++L+ +        +L ++ + +VK
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVK 122


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 38  GILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVK 74
           G++S G  + +T++L+ +        +L ++ + +VK
Sbjct: 86  GVISKGTLLFMTSQLKPDKVTVFCNRDLGREKQFIVK 122


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,589
Number of Sequences: 317
Number of extensions: 918
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 124
length of database: 114,650
effective HSP length: 50
effective length of query: 74
effective length of database: 98,800
effective search space:  7311200
effective search space used:  7311200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)