Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
(124 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 29 0.16
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 0.86
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 1.1
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 2.0
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 25 2.6
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 3.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 24 6.1
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 24 6.1
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 8.1
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.5 bits (63), Expect = 0.16
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 31 LGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVK 74
L + P GI++DG+ + + N++ S L TLS S K T+ ++K
Sbjct: 376 LKIESPGGIINDGSILDVLNQIGSGLH-TLSLSGCTKLTDEVLK 418
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 0.86
Identities = 21/78 (26%), Positives = 29/78 (37%)
Query: 16 SNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKS 75
SNN +S+ L T G +D + S +L SNL+KK L
Sbjct: 172 SNNTSSQHSTPPLSISDTSTHTGSSTDNVEANPNTGFSSARKRSLRSSNLKKKFVPLSSP 231
Query: 76 INGNINLNFDDTGSDSTS 93
N + DD SD +
Sbjct: 232 EESNESEFIDDDESDEVA 249
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 1.1
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 38 GILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKN 97
G+ +GND P + + + +L+ TE+L K+ + + G +S ++ +
Sbjct: 44 GVTENGNDSPEAFKNELDNRNNADSQSLQSSTESLFKADSEDYLCKKVSKGPESPRVN-S 102
Query: 98 FHARYGNN 105
FH Y N
Sbjct: 103 FHNSYSRN 110
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 2.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 42 DGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGS 89
D +D+ I+ R + T S SNL ++ IN I F D S
Sbjct: 346 DDSDVRISKRSRGRDLRTPSESNLFSLIASITSDINEQIQKRFPDATS 393
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 2.6
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 40 LSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINL------NF---DDTGSD 90
L+D +PI +L +A L R +L+K ++KS L NF DD +
Sbjct: 204 LNDEKLVPIAKKLNISVAQLLIRWSLQKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQE 263
Query: 91 STSIDKNFHA 100
+S D+++HA
Sbjct: 264 LSSFDEHWHA 273
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 65 LRKKTEALVKSINGNINLNFDDTG 88
+++ TEA++K IN + + DTG
Sbjct: 50 IKEDTEAVLKRINDTVGIKESDTG 73
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 6.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 52 LQSELALTLSRSNLRKKTEALVKSINGNIN 81
LQ++L + R + EAL KSING IN
Sbjct: 103 LQAQLTDVNTPEYQRMQWEALKKSINGLIN 132
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 52 LQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTS 93
L +++LT+ +N + K + L K++ + D +GS S +
Sbjct: 139 LYQQVSLTIRNANKQAKNDKLNKAVQSALFTLVDGSGSGSAT 180
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 8.1
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 18 NGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKK 68
N EP +D +G D + I++ IP+T +E L+ + K
Sbjct: 534 NAQPGSEPLLIDVVGPDQINEIVARWTGIPVTRLKTTEKERLLNMEKVLSK 584
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.129 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,737
Number of Sequences: 5004
Number of extensions: 19927
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 9
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)
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