Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
(124 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540... 28 1.9
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 27 3.3
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 27 4.3
07_03_0256 - 15875066-15877025,15877292-15877911 27 5.7
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626... 26 7.5
07_01_0075 - 558829-560859 26 7.5
06_01_0668 - 4882174-4884204 26 7.5
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 26 7.5
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 26 10.0
>05_03_0338 +
12652966-12653017,12653813-12653860,12653924-12654080,
12654104-12654206,12654866-12655111,12655802-12656204,
12656257-12656354,12656460-12657044,12657120-12657566
Length = 712
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 56 LALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNF 98
++L R T +++ INGN + D+GS ST +D +F
Sbjct: 495 VSLNAVHDTTRPDTFSVIIQINGNKAVELIDSGSTSTFMDMDF 537
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 27.5 bits (58), Expect = 3.3
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 28 LDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFD-D 86
+ L TD+ LSD + I L+ R N+R+K + L F D
Sbjct: 361 IQLLNTDIRSRPLSDAERVKIKKALRGVKVGVTHRGNMRRKYRISGLTSQATRELTFPVD 420
Query: 87 TGSDSTSIDKNFHARYG 103
G S+ + F YG
Sbjct: 421 QGGTVKSVVQYFQETYG 437
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 31 LGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFD-DTGS 89
L +D+ LSD + I L+ R N+R+K +I L F D G
Sbjct: 393 LNSDIHSRPLSDAERVKIKKALRGVKVEVTHRGNMRRKYRISGLTIQPTRELTFPVDEGG 452
Query: 90 DSTSIDKNFHARYG 103
S+ + F YG
Sbjct: 453 TVKSVVQYFQETYG 466
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 48 ITNRLQSELALTLSRSNLRKKTEAL-VKSINGNINLNFDDTGSDSTSIDKNFHARY 102
I+ R+Q A + S+ ++ + + + S++ +L+ D +GS + S+D A Y
Sbjct: 42 ISGRIQELKARVMDESDRYRRYDTMNISSMSSEAHLHRDASGSRTRSVDPRLSALY 97
>07_03_0506 -
18861787-18861917,18862017-18862201,18862542-18862613,
18863163-18863234,18863596-18863667,18864371-18864518,
18864864-18865922,18866663-18866762
Length = 612
Score = 26.2 bits (55), Expect = 7.5
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 13 CEYSNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEAL 72
C Y NN + +L F P+ D+ + L S L L S + + EAL
Sbjct: 96 CYYINNVPNGHYQVRLFFALVADPNLDSEPIFDVSVEGTLFSSLLLGWSSEDEKTFAEAL 155
Query: 73 VKSINGNINLNFDDTGSDSTSI 94
V + ++++ F TG SI
Sbjct: 156 VFVQDSSLSICFHSTGHGDPSI 177
>07_01_0075 - 558829-560859
Length = 676
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 41 SDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDK 96
SDG+D+ I + S+ LSRS R K+ + + G F D+ +I K
Sbjct: 582 SDGDDMDIDGQQSSKKLRALSRSRSRSKSRPPEEVVPGE---GFKDSAQKKKAIKK 634
>06_01_0668 - 4882174-4884204
Length = 676
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 41 SDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDK 96
SDG+D+ I + S+ LSRS R K+ + + G F D+ +I K
Sbjct: 582 SDGDDMDIDGQQSSKKLRALSRSRSRSKSRPPEEVVPGE---GFKDSAQKKKAIKK 634
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 26.2 bits (55), Expect = 7.5
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 17 NNG--NSR-REPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALV 73
NNG NSR R+ ++ G+ + I+ ND+ R E T+ + LR+K++
Sbjct: 468 NNGGKNSRARKAARVSSSGSSIAAAIVEAENDLEAQERENKEDLKTMLKDALREKSDVFN 527
Query: 74 KSINGNINLNFDDTGSDSTSIDKNFHAR 101
+ + G ++ F AR
Sbjct: 528 SENPEEDKIKLGEPGWRERYYEEKFGAR 555
>01_06_0893 -
32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 25.8 bits (54), Expect = 10.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 48 ITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKN 97
I N L+S+ ++ +R R ++ + N NI + DD S +TS D+N
Sbjct: 587 INNLLESKDQISRNRGKARSRSTS-----NMNITEDVDDLPSSTTSSDRN 631
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.129 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,555
Number of Sequences: 37544
Number of extensions: 109990
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 9
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)
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