GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
         (124 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15760-1|CAA33767.1|  187|Drosophila melanogaster protein ( Dros...    30   1.0  
M21159-1|AAA28927.1|  557|Drosophila melanogaster protein ( D.me...    28   4.1  
AY118416-1|AAM48445.1|  557|Drosophila melanogaster RE70560p pro...    28   4.1  
AE014297-3168|AAN13906.1|  557|Drosophila melanogaster CG5374-PB...    28   4.1  
AE014297-3167|AAF56009.1|  557|Drosophila melanogaster CG5374-PA...    28   4.1  
X63503-1|CAA45074.1| 1002|Drosophila melanogaster yemanuclein-al...    27   5.4  
BT015223-1|AAT94452.1|  842|Drosophila melanogaster RE33235p pro...    27   5.4  
AE014297-4321|AAF56858.2| 1002|Drosophila melanogaster CG14513-P...    27   5.4  
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    27   7.2  
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    27   7.2  
AY060618-1|AAL28166.1|  665|Drosophila melanogaster GH04232p pro...    27   9.5  
AE014134-235|AAF51389.1|  665|Drosophila melanogaster CG5397-PA ...    27   9.5  

>X15760-1|CAA33767.1|  187|Drosophila melanogaster protein (
           Drosophila melanogastermRNA of pig-1 gene. ).
          Length = 187

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 16  SNNGNSRREPTKLDFLGTDMPDGIL 40
           SNN N RR PT     GT +P G++
Sbjct: 148 SNNNNKRRHPTTTTGAGTTIPGGVV 172


>M21159-1|AAA28927.1|  557|Drosophila melanogaster protein (
           D.melanogaster T complexprotein 1 (Tcp-1) mRNA, complete
           cds. ).
          Length = 557

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 3   KNARPVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSR 62
           K+A  +   +  Y N+  ++ E + L + G D+ +G++ D     +     S++      
Sbjct: 461 KDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKI------ 514

Query: 63  SNLRKKTEALVK--SINGNINLNFDDTGSDS 91
            +L+  TEA +    I+  I LN +D    S
Sbjct: 515 KSLKFATEAAITILRIDDMIKLNPEDKSGKS 545


>AY118416-1|AAM48445.1|  557|Drosophila melanogaster RE70560p
           protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 3   KNARPVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSR 62
           K+A  +   +  Y N+  ++ E + L + G D+ +G++ D     +     S++      
Sbjct: 461 KDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKI------ 514

Query: 63  SNLRKKTEALVK--SINGNINLNFDDTGSDS 91
            +L+  TEA +    I+  I LN +D    S
Sbjct: 515 KSLKFATEAAITILRIDDMIKLNPEDKSGKS 545


>AE014297-3168|AAN13906.1|  557|Drosophila melanogaster CG5374-PB,
           isoform B protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 3   KNARPVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSR 62
           K+A  +   +  Y N+  ++ E + L + G D+ +G++ D     +     S++      
Sbjct: 461 KDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKI------ 514

Query: 63  SNLRKKTEALVK--SINGNINLNFDDTGSDS 91
            +L+  TEA +    I+  I LN +D    S
Sbjct: 515 KSLKFATEAAITILRIDDMIKLNPEDKSGKS 545


>AE014297-3167|AAF56009.1|  557|Drosophila melanogaster CG5374-PA,
           isoform A protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 3   KNARPVSVTICEYSNNGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSR 62
           K+A  +   +  Y N+  ++ E + L + G D+ +G++ D     +     S++      
Sbjct: 461 KDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKI------ 514

Query: 63  SNLRKKTEALVK--SINGNINLNFDDTGSDS 91
            +L+  TEA +    I+  I LN +D    S
Sbjct: 515 KSLKFATEAAITILRIDDMIKLNPEDKSGKS 545


>X63503-1|CAA45074.1| 1002|Drosophila melanogaster yemanuclein-alpha
           protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 66  RKKTEAL--VKSINGNINLN-FDDTGSDSTSIDKNFHARYGNN 105
           +KKT+ L  V + NG+ + + F D   D   I K   A+YGN+
Sbjct: 80  KKKTKKLKQVSTTNGSASTDPFADNDDDVARIVKELEAKYGNS 122


>BT015223-1|AAT94452.1|  842|Drosophila melanogaster RE33235p
           protein.
          Length = 842

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 66  RKKTEAL--VKSINGNINLN-FDDTGSDSTSIDKNFHARYGNN 105
           +KKT+ L  V + NG+ + + F D   D   I K   A+YGN+
Sbjct: 80  KKKTKKLKQVSTTNGSASTDPFADNDDDVARIVKELEAKYGNS 122


>AE014297-4321|AAF56858.2| 1002|Drosophila melanogaster CG14513-PA
           protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 66  RKKTEAL--VKSINGNINLN-FDDTGSDSTSIDKNFHARYGNN 105
           +KKT+ L  V + NG+ + + F D   D   I K   A+YGN+
Sbjct: 80  KKKTKKLKQVSTTNGSASTDPFADNDDDVARIVKELEAKYGNS 122


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 18  NGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSIN 77
           N N+   P  L F GT+ PDG    G  I I NR++        ++ L+  + AL  + N
Sbjct: 42  NKNNFHIPGYL-FYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLN-N 99

Query: 78  GNINL 82
           G+  L
Sbjct: 100 GSTTL 104


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 18  NGNSRREPTKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSIN 77
           N N+   P  L F GT+ PDG    G  I I NR++        ++ L+  + AL  + N
Sbjct: 42  NKNNFHIPGYL-FYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLN-N 99

Query: 78  GNINL 82
           G+  L
Sbjct: 100 GSTTL 104


>AY060618-1|AAL28166.1|  665|Drosophila melanogaster GH04232p
           protein.
          Length = 665

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 43  GNDIPITNRLQSELALTLSRSNLRKKTE-----ALVKSINGNI 80
           GN++ I N L+S+ A  + +++ + +TE     ALVK + GN+
Sbjct: 290 GNELEIVNCLRSKSAEDIIKNDDKVQTERLAGRALVKGLTGNV 332


>AE014134-235|AAF51389.1|  665|Drosophila melanogaster CG5397-PA
           protein.
          Length = 665

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 43  GNDIPITNRLQSELALTLSRSNLRKKTE-----ALVKSINGNI 80
           GN++ I N L+S+ A  + +++ + +TE     ALVK + GN+
Sbjct: 290 GNELEIVNCLRSKSAEDIIKNDDKVQTERLAGRALVKGLTGNV 332


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,670,889
Number of Sequences: 52641
Number of extensions: 211551
Number of successful extensions: 385
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 12
length of query: 124
length of database: 24,830,863
effective HSP length: 76
effective length of query: 48
effective length of database: 20,830,147
effective search space: 999847056
effective search space used: 999847056
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)