GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
         (124 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    26   8.9  
Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical pr...    26   8.9  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    26   8.9  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    26   8.9  

>U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical
           protein K09E3.7 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 6/45 (13%)

Query: 38  GILSDGNDIPITNRLQSELAL----TLSRSNLRKKTEALVKSING 78
           G +S GN+ PI +R+ S  A+    T+S S L  K EA+ + +NG
Sbjct: 579 GTISPGNNAPINSRVSSLRAMEQQRTVSASTL--KQEAVFEMVNG 621


>U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK682.7 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 51  RLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKN 97
           R   +LA  +S  +L K  + L+K I   +N N  ++   S S DKN
Sbjct: 150 RHMEKLAGVISWDDLEKAADELIKKIG--LNTNVQNSRRSSRSRDKN 194


>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 39  ILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDDTGS 89
           + +  N IPI   +  +  L LSR +      ++  S++  I  NF D+G+
Sbjct: 232 VTTQNNTIPIHKSVSCQ-QLVLSRKSSMSSAHSVSPSLSEEIVFNFPDSGT 281


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 26  TKLDFLGTDMPDGILSDGNDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFD 85
           TK+  L T+ PD ++S  N++ +++   ++  LT  ++   ++T   +KS +  + +  D
Sbjct: 153 TKIQKLFTENPDDVISFFNNMTLSDGDDTQPVLTAIQN--AQQTYPKMKS-HALVLVFTD 209

Query: 86  DTGSDSTSIDKNF 98
            T SD+T+    F
Sbjct: 210 STSSDATAWSHRF 222


>Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical
           protein R06F6.2 protein.
          Length = 950

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 60  LSRSNLRKKTEALVKSINGNINLNFDDTGSDSTSIDKNFHARYGN 104
           L   NL  K + LVK    ++ +       D     K  HA+YGN
Sbjct: 348 LIEKNLATKLDILVKKSMFDVAVLIAKNSRDGGDYLKGIHAKYGN 392


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 40    LSDGNDIPITNRLQSELALTLSRSNLRKKTE 70
             +  G  IP TN  ++ LALT    NL+K  E
Sbjct: 11133 IQSGKLIPTTNEEKTGLALTGKNKNLKKGEE 11163


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 40    LSDGNDIPITNRLQSELALTLSRSNLRKKTE 70
             +  G  IP TN  ++ LALT    NL+K  E
Sbjct: 11133 IQSGKLIPTTNEEKTGLALTGKNKNLKKGEE 11163


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,115
Number of Sequences: 27539
Number of extensions: 107139
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 12,573,161
effective HSP length: 73
effective length of query: 51
effective length of database: 10,562,814
effective search space: 538703514
effective search space used: 538703514
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)