GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000929-TA|BGIBMGA000929-PA|undefined
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.1  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 44  NDIPITNRLQSELALTLSRSNLRKKTEALVKSINGNINLNFDD 86
           ND+  T +  +E+ +T    N  KK+  LV + NG +     D
Sbjct: 408 NDLLTTEKDNNEI-VTAQFLNQLKKSSVLVHTKNGRLKYQISD 449


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 82   LNFDDTGSDSTSIDKNFHARYGNN 105
            L++D+       +D N   RYG N
Sbjct: 1255 LSYDEKMDQKPKMDFNVDIRYGKN 1278


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 34 DMPDGILSDGND 45
          DMPD I  +G+D
Sbjct: 48 DMPDYIFEEGDD 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,968
Number of Sequences: 429
Number of extensions: 1265
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)