GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000928-TA|BGIBMGA000928-PA|IPR001478|PDZ/DHR/GLGF
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    31   0.40 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   2.8  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   3.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   5.0  

>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 499 VHRKMFANLDITDKETATHNIDNSDPMFSDDESK 532
           ++R+  A L + + +T+   I   DP+F+D+ESK
Sbjct: 391 LNRESEATLGVNNAQTSRSTIPEEDPLFNDEESK 424


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 501 RKMFANLDITDKETATHNIDNSDPMFSDDESKANT 535
           RK +  L   +KET  +N+ N++ +F+ DE   NT
Sbjct: 258 RKFWNQLPDREKETFLNNLSNANGIFNFDERFTNT 292


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 461 STNTENXXXXXXXXXXXXXXXDNDKKKQHDAL--MDEFKK---VHRKMFANLDITDKETA 515
           S NTE                D+    Q + L   D  +K   VH  + A  +  D+ TA
Sbjct: 286 SENTEEIDTVSKTSGVLELDNDSTNNFQKEGLDEQDNLQKEESVHIDVPAEFEAFDERTA 345

Query: 516 THNIDNSDPMFSDD 529
             N+DN   MFS +
Sbjct: 346 VVNVDNLKEMFSSN 359


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 380 SNQSPRKSTFSLNNGGRGNDKKTIVVE 406
           SN S +K    + NGG  N KKT VV+
Sbjct: 73  SNSSSKKRAKVMGNGGLKNGKKTAVVK 99


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,048
Number of Sequences: 5004
Number of extensions: 78043
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 4
length of query: 535
length of database: 2,362,478
effective HSP length: 76
effective length of query: 459
effective length of database: 1,982,174
effective search space: 909817866
effective search space used: 909817866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)