Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000928-TA|BGIBMGA000928-PA|IPR001478|PDZ/DHR/GLGF
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 33 0.76
03_05_0122 - 21025469-21026719 31 1.7
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 31 2.3
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 31 3.0
08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368... 31 3.0
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 31 3.0
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 31 3.0
07_03_0290 - 16305703-16305990,16306119-16306307,16306386-163064... 30 4.0
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127 30 5.3
04_04_1559 - 34428286-34429062 30 5.3
02_01_0035 - 220036-221419,222050-222801 29 7.0
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 29 9.3
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 32.7 bits (71), Expect = 0.76
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 171 PEWKPGIFVQFVREGGIAREAGLRPGDQILSCNG 204
P+ K G+ V V G A AG RPGD ++ +G
Sbjct: 376 PDVKNGVLVPMVTPGSPAEHAGFRPGDVVVEFDG 409
>03_05_0122 - 21025469-21026719
Length = 416
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 175 PGIFVQFVREGGIAREAGLRPGDQILSCNG 204
PG+ V V G A AGL PGD ILS G
Sbjct: 178 PGVLVPEVIPGSAAARAGLLPGDVILSVPG 207
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 490 DALMDEFKKVHRKMFANLDITDKETATHNIDNS----DPMFSDDESKAN 534
+A +D ++++H D TD + A+ +D+S D MF ++ KAN
Sbjct: 544 EAELDNYRRLHEPFGCKFDFTDGDMASGVLDSSDFMRDTMFDFEDEKAN 592
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 30.7 bits (66), Expect = 3.0
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 85 RVDDAVHGELIHYLASQSRLKIKVRRKYSTKGHEALSWQFVSERASLGSDVSSSPTLCHD 144
R D+A+H I+ +++L+ K++R S +G E S +F S G +P
Sbjct: 246 RKDEALHYFKIYKAEVENQLERKIKRLRSDRGREYFSNEFASFCEEFGIIHERTPPYLPQ 305
Query: 145 TEGLVDLRLSILVP-PRAKLG-CGICKGPEW 173
+ G+ + + L A L G+CK EW
Sbjct: 306 SNGVAERKNRTLAEIVNAMLDTTGLCK--EW 334
>08_01_0415 +
3687998-3688096,3688326-3688520,3689219-3689385,
3689459-3689509,3689576-3689657,3689764-3689832,
3689939-3690109
Length = 277
Score = 30.7 bits (66), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 166 GICKGPEWKPGIFVQFVREGGIAREAGLRPGDQIL 200
G+ G + G+ + V GG A AGL+ GDQ+L
Sbjct: 84 GLTLGQKTGGGVVITAVDSGGNAARAGLKSGDQVL 118
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 30.7 bits (66), Expect = 3.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 176 GIFVQFVREGGIAREAGLRPGDQILSCNGTDFGNIAFNEAI 216
G+ V+ V A + G+R GD ILSC G + N+ E I
Sbjct: 417 GLIVREVFSQCAAEKHGIRVGDVILSCQGENISNVTQLEDI 457
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 30.7 bits (66), Expect = 3.0
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 186 GIAREAGLRPGDQILSCNGTD-FGNIAFN 213
G A AG+R GD++LS NG D G AF+
Sbjct: 197 GPAHSAGVRQGDELLSVNGIDVMGKSAFD 225
>07_03_0290 -
16305703-16305990,16306119-16306307,16306386-16306419,
16307406-16307533,16307571-16307600,16307821-16307841,
16308467-16308537,16309394-16309415
Length = 260
Score = 30.3 bits (65), Expect = 4.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 136 SSSPTLCHDTEGLVDLRLSILVPPRAK 162
SSS +C T+ LVDL +S+L P + +
Sbjct: 206 SSSEAICQGTQHLVDLNISVLTPGKER 232
>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
Length = 649
Score = 29.9 bits (64), Expect = 5.3
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 114 TKGHEALSWQFVSERASLGSDVSS---SPTLCHDTEGLVDL-RLSILVPPRAKLGCGICK 169
+ GH A+ + E A LGS V++ SP G D+ +L I P
Sbjct: 127 SNGHFAVLETLLLEEAWLGSTVNARGVSPLYLAVLSGRADMVQLLIEQSPEVVRSPAYYS 186
Query: 170 GPEWKPGIFVQFVREGGIAREAGLRPGDQILSCNGTDFGNIAFNEAITAMKATGRLELV 228
GP+ K + + + LR +L+ G DFGN A + A +A GR+ +V
Sbjct: 187 GPDGKTALHAAALVSEDMTES--LRLSMPMLTRRGDDFGNTALHYATSA----GRIRVV 239
>04_04_1559 - 34428286-34429062
Length = 258
Score = 29.9 bits (64), Expect = 5.3
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 160 RAKLGCGICKGPEWKPGIFVQFVREGGIAREAGLRP-GDQILSCNGTDFGNIAFNEAITA 218
R++ GI G E G +GG ARE G G + N + +GN A ++ + A
Sbjct: 153 RSEAAHGIRAGGEGVAGSAPPVADDGGSAREGGRETMGSRRGGVNPSQYGN-ALSKKLNA 211
Query: 219 MKATGRLELVIREG 232
+ G ++LV +G
Sbjct: 212 IAGGGMVDLVGNDG 225
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 29.5 bits (63), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 295 LKRRTWDSLDFDWKHKDIHNFDAPSDIEP-DYDCPSIPNNPHTFENK 340
+K TW LD D+ H + AP +P D P+ P + F+NK
Sbjct: 246 IKEPTWRPLDIDYIHSSSSSKRAPPKDKPATPDSPAPPPPAYYFKNK 292
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 29.1 bits (62), Expect = 9.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 176 GIFVQFVREGGIAREAGLRPGDQILSCNG 204
G+ V+ V EG IA + G+R GD I NG
Sbjct: 505 GLIVKEVSEGSIAEKLGVRVGDVIKFFNG 533
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,956
Number of Sequences: 37544
Number of extensions: 518732
Number of successful extensions: 1003
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 15
length of query: 535
length of database: 14,793,348
effective HSP length: 85
effective length of query: 450
effective length of database: 11,602,108
effective search space: 5220948600
effective search space used: 5220948600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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